Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02404 ATGTTGATCAACAAAGAAACAGAGGATTTATGTGATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTAATGGCATTTTTCAGTCTAATCAGAAGTGTCTTGTTCCCGTAGCTATCAGCTTTGAACATGAATCCGCTAAAAACACATTTAAATCATTCTGCTCTAGTAATGAAAACTCAGTTGTATTGCATCCCTCATCTTCTAGACTTACACACCCTGAAGAAGAGGACTTTAATGTAATTCGGCATTCCAAAGAGGCTGCTCTGGGGTGTGTGCCAGAGAGTTTCATTTGTGAAGACCAGAATGATGAGGATGTGAATGTCAAACGTATGAAGTTTTCTCCGCATGAACTTGCTTGTAGTAGATCTGATTCAGAAAAAAATATGAGTTCATCACGACTTTCAAAAGTAGTAGTTTCTAACCTGTCTTGTGCTGTTACGAGCTGTGATAGTGAATCAATTGCATTTCGTTTAGTTGAATCATCTAAACATGGTGTGATATCTGGCTGTTATCTATTGAACCATAACAAGTTAAATAAACAAGCTGCCAAGGATGATGTAGATGTTAGAAATTTTAACTCAACAACAGCAGATGAAAATATTGCAAAAGAGGCGCGTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAACAGGCTTGTAGTTACAAGTCCGTCAACCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCGGTATCTTCTAATGTGGACATCTCAAATGCATCCTCAATGCTAGAGGAAGAGGACCCCCGTACTATACTGCAGGTTCATATTGTGCAGTTGCTTAAGATGGCAGGATGGTCTATTGAGAAGCGTCAGCGGCCTAGTAGGCGTTACCCAGAGTCAGTTTATAGGACACCAGAGGGAAAGACTGTTCGGGAGTTTACAAAGGCTTGGAGATTATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTTATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTTTGATCTATCCAGTGCACTGATAAAGGTTGAAAAAACAAAGATGCAGTCAGAAGACCCTGCTGCTATATTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTTATATTTTTTGATAGAAAGATTGGAGCGCTGAAAAAGGGAGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGCAAGTATAAGGTGGCATGTGCTCCCATTGGTTCAAGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAATGTAAATGCTGTTCATCAAGCCAAAATTAGAAATTCCGAAAGTGTTGATAAACAGATTTCAGAAAACTATCTGGAAACAAATAAAATCATTGATGGAGATGTGCCAATGGACATGTCAGAAGAAAATAATGCATCCGGTGTGAGCCATGACCTGGTTCATTCTCATGACTCTAGGGCTATGCAACCGTCTGAATGTAGTGAGGAAGAGGGTGGCAAAATCTCAGTAGATTCTGTATTTGGGAGGGATAACAAGTATTCTGCTTCTAATGTTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAATTGAGTATGTTCTACCATGGTGACATGCTGGGCTCAACTGTTACTGACCAGGTGCAGTCACTAGATGGTGAAGCAAGTGGGTTGGAAGAGGTCCAGGATTATCTAGTTGACAATGCGAGAAAGAAAAGAAACTGCAGAAAGTTATCATCTGTTGGTGCAATTCAGAGAAATATTAGGAAAACAAACTGCCCCACAGCTGGAACAGATAAGTCTAACAGATGCCTGATTAAAGACGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCAGCCCAGAGACGATCCGGGGTAATTCTAGTGCTAAATCCTGCAAATCAAGGGGTCAGAGAAAGTTTAAAAGCCAAAAGGGCCGATGCAGGTTGCTACCAAGGAATCCCTCTAATGCAGGGAAGCACAATAAGGACGGCAATAGGTTTTATTTGGGTGCAAGGACAATATTGTCCTGGTTGATTGATAATGGGGTCATATCTTTAAGTGATGTGATTCAGTACCGAAATCCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATTTGTATATGTTGTGGTAAGGTGCTCACATTATCAGAGTTCAAGTTTCATGCTGGTTTTACACTGAATCGCCCCTGCTTGAATATTTTCATGGAGTCTGGTGAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAACTGAATACAAAGCCAGGAAAAGCCAGAATCAAGCTGTACATGCTGATGAAAATGATAAAAATGATGATTCGTGCGGATTGTGTGGCGAGGGGGGTGAGCTGATATGTTGCGATAACTGTCCATCTACTTTTCACCTAGCTTGTTTGTCCACTCAGgagATCCCAGATGGCGACTGGTACTGCACTAACTGCACTTGTAGGATATGTGGAAATTTGGTCATTGACAAAGACACTTTAGATGCGCATGATTCATTACAATGTTCACAGTGCGAACATAAATATCATGAGAAATGCCTTGAAGATAGAGATAAACAAGAAGGAGCAATTTTGGACACTTGGTTTTGTGGTCAGAGTTGTCAAGAGGTGTACTCTGGACTCCAGTCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCATCTCATGGACCCTTCTTAGATGCATCCACGATGACCAAAAAGTTCACTCTGCACAGTGGTTTGCCCTAAAGGCGGTATGCAATACAAAATTAGCCGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGTTTGATCCAAGAACAGGCATCCACCTGATACCCCAAGTTTTATACAACTGGGGATCTGAGTTTGCTCGTCTAAACTTTCAAGGGTTTTACACCATCGTATTGGAGAAAGACGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTAGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGCCAGGGAATGTGCCGACTCCTTGTGACTGCTATTGAACAGGTGTTAATATCTTTCAAGGTGGAAAAGCTTGTGATATCAGCCATTCCAGATTTGGTTGAGACGTGGACAAAGGGCTTTGGATTTATACCTGTTGATGACATCGAAAGGCAAAGATTGAATAAAATTAACCTGATGGTTTTTCCTGGGACAGTGTTACTTGTGAAATCCTTGCATTGGAAAGAGAAAATTGAAGCTCAAACAGGACTGTGTGATCAATCAACTCTAGCAACAGATGAATCAATCAAAGCAGGCATCTGTTCTGAAGGAATGGCCATTTCTGAATCAATGGCACAAGATATTGGAAACATAACTACCAACAAAGGTGAAGCAAAGTCAGAACATGAACCTGTGGATGGAAAAAATCAATCAGACTATGAAGCTGGCAGTGAAACCGGCAGAGATGACAAAACACAAGCTGTTGACACTGCATTAGAAGCCAAAGAATCAACAGAAATAAGTAGCTTTTCTAAAGAAGAGAAGATCTCCTACTTGGAAGTGTCAGGTGGCTCAGAGAAATCTATTGAAGAAAAGAATGTGAAGGAATTGAGAACAAGCAATAATGCAGAAATGGCAAATGAATCAGTACAGCAATCTAGTGAGAATTGTGCTGACAAAGATGGTGCTGAACCAGGTATTAGTATTGTTGAGGACAAGAATATCAAAATAGGTGAGGACCAGCAAAATGCTTTGCAGGGCCATTTTTCAAATCTGTCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGGACTTTTGCAAAGTCTGCAAGCTGA 3942 0.4054 MLINKETEDLCDDNFEGSNEERQIFSEVFSGNGIFQSNQKCLVPVAISFEHESAKNTFKSFCSSNENSVVLHPSSSRLTHPEEEDFNVIRHSKEAALGCVPESFICEDQNDEDVNVKRMKFSPHELACSRSDSEKNMSSSRLSKVVVSNLSCAVTSCDSESIAFRLVESSKHGVISGCYLLNHNKLNKQAAKDDVDVRNFNSTTADENIAKEARVSKAAASPVSQESFANRLVVTSPSTTVVKKSGSPLNPEEMPVSSNVDISNASSMLEEEDPRTILQVHIVQLLKMAGWSIEKRQRPSRRYPESVYRTPEGKTVREFTKAWRLCGELLSVEKCNFMCRDYKEWTDISQFWFDLSSALIKVEKTKMQSEDPAAILAYQWWLLDPFVVVIFFDRKIGALKKGEVVKATWSLVSSKYKVACAPIGSSSGNLNQVPGGSNVNAVHQAKIRNSESVDKQISENYLETNKIIDGDVPMDMSEENNASGVSHDLVHSHDSRAMQPSECSEEEGGKISVDSVFGRDNKYSASNVILKKKMRRKCKRVSEIKLSMFYHGDMLGSTVTDQVQSLDGEASGLEEVQDYLVDNARKKRNCRKLSSVGAIQRNIRKTNCPTAGTDKSNRCLIKDDDLLVSAIFRNKDFSPETIRGNSSAKSCKSRGQRKFKSQKGRCRLLPRNPSNAGKHNKDGNRFYLGARTILSWLIDNGVISLSDVIQYRNPKDNVVIKDGRITKDGIICICCGKVLTLSEFKFHAGFTLNRPCLNIFMESGEPFTLCLLQAWSTEYKARKSQNQAVHADENDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGDWYCTNCTCRICGNLVIDKDTLDAHDSLQCSQCEHKYHEKCLEDRDKQEGAILDTWFCGQSCQEVYSGLQSQVGLVNQVADGISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMFDPRTGIHLIPQVLYNWGSEFARLNFQGFYTIVLEKDDVLISVASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVTAIEQVLISFKVEKLVISAIPDLVETWTKGFGFIPVDDIERQRLNKINLMVFPGTVLLVKSLHWKEKIEAQTGLCDQSTLATDESIKAGICSEGMAISESMAQDIGNITTNKGEAKSEHEPVDGKNQSDYEAGSETGRDDKTQAVDTALEAKESTEISSFSKEEKISYLEVSGGSEKSIEEKNVKELRTSNNAEMANESVQQSSENCADKDGAEPGISIVEDKNIKIGEDQQNALQGHFSNLSCKTFLGSNFDTDSNIECSVMYDETAFFGTFAKSAS 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02404 1313 Gene3D - 945 1083 - -
Gma13g02404 1313 CDD NAT_SF 992 1053 - -
Gma13g02404 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 858 IPR013083 -
Gma13g02404 1313 MobiDBLite consensus disorder prediction 1230 1249 - -
Gma13g02404 1313 MobiDBLite consensus disorder prediction 1147 1179 - -
Gma13g02404 1313 PANTHER PHD FINGER PROTEIN 12 1 462 IPR042163 GO:0003714|GO:0045892
Gma13g02404 1313 SUPERFAMILY FYVE/PHD zinc finger 783 841 IPR011011 -
Gma13g02404 1313 SMART PHD_3 800 841 IPR001965 -
Gma13g02404 1313 SMART PHD_3 842 896 IPR001965 -
Gma13g02404 1313 MobiDBLite consensus disorder prediction 1148 1179 - -
Gma13g02404 1313 PANTHER INCREASED DNA METHYLATION 1 1 462 - -
Gma13g02404 1313 PANTHER INCREASED DNA METHYLATION 1 462 1311 - -
Gma13g02404 1313 Pfam Tify domain binding domain 723 773 IPR032308 -
Gma13g02404 1313 ProSiteProfiles Zinc finger PHD-type profile. 798 843 IPR019787 -
Gma13g02404 1313 Pfam PHD-finger 801 842 IPR019787 -
Gma13g02404 1313 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 951 1098 IPR000182 GO:0016407
Gma13g02404 1313 PANTHER PHD FINGER PROTEIN 12 462 1311 IPR042163 GO:0003714|GO:0045892
Gma13g02404 1313 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 951 1074 IPR016181 -
Gma13g02404 1313 MobiDBLite consensus disorder prediction 661 681 - -
Gma13g02404 1313 CDD PHD2_CHD_II 800 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02404 Gma-Chr13 38794903 38802550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02404 1 1110 PHD Transcription Factor Family AT3G14980 40.741 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma13g02404 TDBD 6.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02404 - - gmx:100795889 2615.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02404 13 38794903 38802550 Gma13g02404 13 38794903 38802550 ECH