Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02389 ATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCGTTCAAGGAGGTGCTGCCGGCGGAGGGCGCCGCAATTGTCGGCGGCGAGGACGGGGTCGCCGGCGCCGGTGAGGAGTCGTCGAATGGGAATAATGGTTGGTCCAACATGCTTCCAGAGATCCTCGGCGAGATCGTGCGGCGCGTGGATGCCGCCGAGGAACAGTGGCCGAACCGCCAGAACGTCGTCGCATGCGCGTGCGTCTGCAAGCGTTGGCGTGACATCACGCGCGAGGTCGTGCGCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAACTTCAACTTTTTATTTATATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTGGTACTCATACCGAGTATATAATTTCACTTGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCATTGAAGTGTCCCGTGACTCCTGTCGTCTCACCATCGGTTGAAAGTTCAGATAGCACGCCGGTCAATGGCCATAAGATTCCCGATAAAGAACAAGTTGCATCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCATGGCCGTGTGACAGTGGCCTCGGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGCTTTGGCACTAAACTTGCTTGAAGCTTCTTGTTGTAAATGTGTTATATCATCAAATAGGACATGA 1101 0.5114 MSLRKVFRSRKFSRSFKEVLPAEGAAIVGGEDGVAGAGEESSNGNNGWSNMLPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPACLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVTPVVSPSVESSDSTPVNGHKIPDKEQVASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFALALNLLEASCCKCVISSNRT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02389 366 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Gma13g02389 366 PRINTS Tubby superfamily signature 291 308 IPR000007 -
Gma13g02389 366 PRINTS Tubby superfamily signature 309 325 IPR000007 -
Gma13g02389 366 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Gma13g02389 366 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Gma13g02389 366 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 346 - -
Gma13g02389 366 ProSitePatterns Tub family signature 1. 309 322 IPR018066 -
Gma13g02389 366 PANTHER TUBBY-RELATED 1 346 - -
Gma13g02389 366 SUPERFAMILY Tubby C-terminal domain-like 97 345 IPR025659 -
Gma13g02389 366 Gene3D Tubby Protein; Chain A 107 348 IPR025659 -
Gma13g02389 366 Pfam F-box domain 48 94 IPR001810 GO:0005515
Gma13g02389 366 Pfam Tub family 109 345 IPR000007 -
Gma13g02389 366 SUPERFAMILY F-box domain 46 91 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02389 Gma-Chr13 38649993 38654117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02389 1 346 TUB Transcription Factor Family AT1G53320 69.014 1.21e-171 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma13g02389 Tub 4.4e-79 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02389 K19600 - gmx:100801919 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02389 13 38649993 38654117 Gma13g02389 13 38649993 38654117 ECH