Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02375 ATGAAGCCTTTTTCTCTCAACATGTTACAAGTATTTTGGTTTCTTGTCATTCCTTTAAACTCACCATGGTTGTGCCAAAACACAGTTGTGTATGCAAATGCAATGCTAGGaaatgagacagatcatttggcattgctcaaattcaaggaatcaatatctagtgacccttatggaatcatgaaatcttggaatagttccatccacttctgcaagtggcatggaatctcatgctaccccatgcatcaaagagttgtggagttgaacttacatgggtaccagttgtatggacccatacttcctcaacttggaaacctctcttttctaagaatcttaaaacttgaaaacaacagtttcaatggaaaaatcccacgggagttgggtcatttgtcacgactagaggtactctatctcactaacaactcattggttggagaaattccttcaaacttgacaagttgctctgagctcaaAGACCTTGACTTGTCAGGGAACAATCTCATTGGTAAAATACCAATTGAAATTGGCTCTCTTCAGAAGCTTCAATACTTTTATGTTGCAAAAAACAACTTAACAGGAGAAGTCCCACCATCCATAGGGAATCTTTCATCCCTGATTGAGCTCTCGGTAGGTTTGAACAACTTAGAGGGAAAGATTCCACAAGAAGTTTGTAGCCTCAAAAACTTGTCACTGATGTCAGTGCCTGTCAACAAATTGTCTGgaaccataccctcagaggtttttagcctttcctcactaacaaatttgctggacttatcacagaactccttgagtggtagtttaccaaatgtagtgagcaagttaaaaaatcttgagaagatggatgtctctgaaaatcatctgtctggtgatattcctggaagcattggagattgcacaagcttggagtacctttatttgcaagggaattctttccatggaatcatacccaccactatggcttcactgaaaggtcttagacgtttagacatgtcacgaaaccacttatctggatcaattcctaaaggtctgcaaaatatttctttcttggcatacttcaatgcatcatttaacatgttggatggagaggtaccaactgaaggtgtcttccaaaatgcaagtgagttagcagtgactggaaacaataaactttgtggaggtattccacagttgcatctaccaTCATGTCCTATCAATGCTGAAGAGCCTACAAAACATCATAATTTCAGGCTGATAGGAGTGATAGTTGGTGTGTTAGCTTTTCTACTCATACTGCTATTTATACTCACTTTTTATTGCATGAGGAAAAGAAACAAGAAACCAACTCTTGATTCACCAGTAACTGACCAGGTGcctaaggtttcataccaaaacctacacaatggaactgatgggtttgcaggtagaaacttaataggatctggaaattttggctctgtctacaaaggaactcttgagtcagaagatgaagttgttgccataaaagtcctgaaccttcaaaagaaaggggctcacaagagtttcattgctgaatgcattgcactaaagaatattagacatcgaaatctgattaagattttgacatgctgttccagtacagattacaaaggtcaagaatttaaagctctaatctttgagtacatgaaaaatggaagcttagaaagttggttgcattcatcaatagatattgaatatcagggtagatccttagaccttgagcaaaggtttaatatcattactgatgttgcttcagcagtgcattatcttcactacgagtgtgagcaaactatccttcattgtgatttaaagcctagcaatgttcttcttgatgattgcatggtagctcatgtaagtgattttggcttagcaagattgctctcaagtattggaatatctcttttgcaaagtagcacaattggaataaaggggactattggttatgctcctccagagtatggaatgggttcagaggtgtcaattgaaggcgacatgtatagctttgggattctggttttagaaatattaactggaaggagacccacagatgaaatatttaaagatggccataatctccataatcatgttaaATTTTCAATTTCAAATAACCTATTGCAGATTGTGGACCCGACTATTCTCCCCAGTGAACTCGAAAGGACTGCTGGCAGTGAAAAGCTTGGCCCTGTGCATCCAAATGCAGAGAAATGTTTACTTTCACTTTTTAGGATTGCACTTGCTTGCTCAGTGGAATCACCAAAGGAAAGAATGAGTATGGTTGATGTCCTTAGGGAGCTTAATCTGATCAAAAGCTTTTCTCCTTTTGAGGTTCGAGGGAGGCTAAGCTAA 2340 0.1333 MKPFSLNMLQVFWFLVIPLNSPWLCQNTVVYANAMLGNETDHLALLKFKESISSDPYGIMKSWNSSIHFCKWHGISCYPMHQRVVELNLHGYQLYGPILPQLGNLSFLRILKLENNSFNGKIPRELGHLSRLEVLYLTNNSLVGEIPSNLTSCSELKDLDLSGNNLIGKIPIEIGSLQKLQYFYVAKNNLTGEVPPSIGNLSSLIELSVGLNNLEGKIPQEVCSLKNLSLMSVPVNKLSGTIPSEVFSLSSLTNLLDLSQNSLSGSLPNVVSKLKNLEKMDVSENHLSGDIPGSIGDCTSLEYLYLQGNSFHGIIPTTMASLKGLRRLDMSRNHLSGSIPKGLQNISFLAYFNASFNMLDGEVPTEGVFQNASELAVTGNNKLCGGIPQLHLPSCPINAEEPTKHHNFRLIGVIVGVLAFLLILLFILTFYCMRKRNKKPTLDSPVTDQVPKVSYQNLHNGTDGFAGRNLIGSGNFGSVYKGTLESEDEVVAIKVLNLQKKGAHKSFIAECIALKNIRHRNLIKILTCCSSTDYKGQEFKALIFEYMKNGSLESWLHSSIDIEYQGRSLDLEQRFNIITDVASAVHYLHYECEQTILHCDLKPSNVLLDDCMVAHVSDFGLARLLSSIGISLLQSSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEILTGRRPTDEIFKDGHNLHNHVKFSISNNLLQIVDPTILPSELERTAGSEKLGPVHPNAEKCLLSLFRIALACSVESPKERMSMVDVLRELNLIKSFSPFEVRGRLS 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02375 779 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Gma13g02375 779 SMART serkin_6 465 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02375 779 Gene3D Transferase(Phosphotransferase) domain 1 547 772 - -
Gma13g02375 779 PANTHER OS04G0122200 PROTEIN 236 773 - -
Gma13g02375 779 PANTHER OS04G0122200 PROTEIN 26 243 - -
Gma13g02375 779 SUPERFAMILY L domain-like 54 395 - -
Gma13g02375 779 Gene3D Phosphorylase Kinase; domain 1 445 546 - -
Gma13g02375 779 SUPERFAMILY Protein kinase-like (PK-like) 439 764 IPR011009 -
Gma13g02375 779 CDD STKc_IRAK 471 766 - -
Gma13g02375 779 ProSitePatterns Protein kinases ATP-binding region signature. 471 494 IPR017441 GO:0005524
Gma13g02375 779 PANTHER LRR RECEPTOR-LIKE KINASE 26 243 - -
Gma13g02375 779 PANTHER LRR RECEPTOR-LIKE KINASE 236 773 - -
Gma13g02375 779 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Gma13g02375 779 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Gma13g02375 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Gma13g02375 779 SMART LRR_typ_2 274 298 IPR003591 -
Gma13g02375 779 SMART LRR_typ_2 249 273 IPR003591 -
Gma13g02375 779 SMART LRR_typ_2 201 225 IPR003591 -
Gma13g02375 779 SMART LRR_typ_2 129 153 IPR003591 -
Gma13g02375 779 SMART LRR_typ_2 322 345 IPR003591 -
Gma13g02375 779 ProSiteProfiles Protein kinase domain profile. 465 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02375 779 Gene3D Ribonuclease Inhibitor 34 99 IPR032675 -
Gma13g02375 779 Gene3D Ribonuclease Inhibitor 100 403 IPR032675 -
Gma13g02375 779 Pfam Protein kinase domain 469 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02375 Gma-Chr13 38532952 38536358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02375 98 767 Receptor kinase-like Gene Family AT3G47570 43.485 2.74e-175 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gma13g02375 Pkinase 8.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02375 - - gmx:100792724 1113.21