Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02291 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGATAACATAAACGCGAGGCAGGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTTTGCGATGCTGAGATTGCTCTCATAGTCTTTTCCACCACTAGCAAACTCTTTGAGTACGCTAGTTCAAGCATGCAACAAATACTTGAAAGGCGTGATCGGCATTCAGGGATTCAAGGATTAGTTAATCCATCTATTGGTCAACAGCTTGGAAGTGACTCCCTTGGCATCCTGCGAAAGGAAATAGAACATAAGACTAATGAAATGAGTCAGTTGAATGGGGAAGAGATCCAAGGATTGACAATAAAAGAATTGCAGAAAGTGGAGGAACTTCTTCAAAGACGTTGGACCACTATTTCAAAAATTAAGGATGAAAAAATTATACAAGAGATCAACCATCTTAAAACAAAGGAAGCCAAACTTATGGAAGAGAACCAGAAATTGAAGCAGAGCTTCGTACGAGAACAAAGGCAACCATACGAGTCATTTACCTGCAGTTCATCTGAATTTCCTCCAGACTGTGGTAATTCTGACACATCTCTCAAGCTGGGGTTGTCTTTATTTGAATGA 621 0.4026 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSTTSKLFEYASSSMQQILERRDRHSGIQGLVNPSIGQQLGSDSLGILRKEIEHKTNEMSQLNGEEIQGLTIKELQKVEELLQRRWTTISKIKDEKIIQEINHLKTKEAKLMEENQKLKQSFVREQRQPYESFTCSSSEFPPDCGNSDTSLKLGLSLFE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02291 206 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Gma13g02291 206 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma13g02291 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma13g02291 206 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gma13g02291 206 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gma13g02291 206 Coils Coil 92 112 - -
Gma13g02291 206 PANTHER - 1 174 - -
Gma13g02291 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma13g02291 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma13g02291 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma13g02291 206 Pfam K-box region 94 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma13g02291 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma13g02291 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma13g02291 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Gma13g02291 206 Coils Coil 148 175 - -
Gma13g02291 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02291 Gma-Chr13 37694344 37701991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02291 1 202 MADS-box Gene Family AT2G22540 44.492 7.64e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma13g02291 K-box 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02291 - - gmx:100810422 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00548 15 4541471 4554588 Gma13g02291 13 37694344 37701991 GST