Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02278 ATGCAGACTCTGGGTTTGTTGGTTGCTCCTGTTCTCGGTTTCTACCTGAGGTTCCTTCGTTTCTCTCTTCGCTTCCTTCTTCTCATGTTCATGGATTTCCCTTCCACCTTCAAGTTCATCACGCAAGCCAGTGAACTCGGTTGTGGCTTCCTCCTCCTCGGTTACTTCTCGCGCCTCTTCAACTTCCTCGGCCTCCTCTTGATCTTCTTCTTCTGTCTAAAGTTTCTCCGCTCTCCGCTCCTCATCTCCAACCACGAGAAATCGTCGTCGTCGTCGTCGAGAGACGACAATTCGAATTCGAAGGAGGAGGAGAATTTGTTCAGAGAGGAGAGTTTGGAGGACGAGGTGTTCGACGTAATGTCGCTCAGGAGGATGGTGAAGGAGGAGCGGCAGCGGTACAACGCGGCGTGCGCGGAGATCGAGCAGGAGCAGGGGGCGGCGGCGTCCGCGGCGGAGGAGGCCATGTCCATGATTCTGCGGCTGCAGAGCGAGAAGAGCGCCGTGGAGATTCAGGCCAAGCAGTTCCAGCGCGTGGTGGAGCAGAAGCAGGAGTACGATCTCGAGGTCATCGAGTCGCTCCGGTGGACGGTGGTGCAGGTGGAGTCGCAGAAGAACCTTCTAGAGCGTCAGTTAGGGGTTTTGAGAGAGAGGCTTAGACAGTTCGTCAATGATCAAGAGATACAGCAGCTTCAAGAACAAGAACAAGAACaggaactccaaggcacagccagtgatgatgattattatgatgatcatgattatgatgGTGCTTCTGTAATGCTTGCAGAATTGGCAATGGAAGCTGACGATGATGACATCAAAGCCGTATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCTAGAGCAGCAGCTAAAGGGAAACGTGTTCAGGCTAATATGGGGGCCAAAAATCATGTGGTTGTAATGCCTGATGCTAATGTAAATGCTTTAGTTGCTGCAGGTTTTGGTGCTGCTGGTCAAAGGTGCATGGCTCTCAGCACTGTTGTTTTTGTTGGAGGCTCAAAACTGTGGGAAAGTAAACTTCTGGAGCATGTCAAAGCTCTTAAAGTAAATGttggaactaaacctgatgcagaccttggtccagtcattagcaaacagGCAAAGGAGCGAATACATAAATTAATTCAATCTGGGGTTGAAAGTGGTGCCAGATTAATGCTCGATGGAAGAAATATAGTGGTCCTAGGGTATGAATCTGGCAATTTTATTGACCCAACCATCTTATCAGATGTCACTGCCAACATGGAGTGCTACAAGGAGGAGATCTTTGGACCAGTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAATGAAAACAAGTATGGAAACGGTGCTTCTATATTTACCACATCTAGTGTGGCTGCGAGGAAATTTCAGGCCGAGATTGAGGCTGGGCAGGAATACTTGAATCTCTCGAGAGCAAGGGTATGA 1479 0.4571 MQTLGLLVAPVLGFYLRFLRFSLRFLLLMFMDFPSTFKFITQASELGCGFLLLGYFSRLFNFLGLLLIFFFCLKFLRSPLLISNHEKSSSSSSRDDNSNSKEEENLFREESLEDEVFDVMSLRRMVKEERQRYNAACAEIEQEQGAAASAAEEAMSMILRLQSEKSAVEIQAKQFQRVVEQKQEYDLEVIESLRWTVVQVESQKNLLERQLGVLRERLRQFVNDQEIQQLQEQEQEQELQGTASDDDYYDDHDYDGASVMLAELAMEADDDDIKAVSFVGSNVAGMHIYARAAAKGKRVQANMGAKNHVVVMPDANVNALVAAGFGAAGQRCMALSTVVFVGGSKLWESKLLEHVKALKVNVGTKPDADLGPVISKQAKERIHKLIQSGVESGARLMLDGRNIVVLGYESGNFIDPTILSDVTANMECYKEEIFGPVLLMEADSLEEAINIINENKYGNGASIFTTSSVAARKFQAEIEAGQEYLNLSRARV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02278 492 Pfam Aldehyde dehydrogenase family 269 487 IPR015590 GO:0016491
Gma13g02278 492 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 269 488 - -
Gma13g02278 492 SUPERFAMILY ALDH-like 259 488 IPR016161 GO:0016491
Gma13g02278 492 Pfam Zein-binding 121 211 IPR007656 -
Gma13g02278 492 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 304 486 IPR016163 GO:0016620
Gma13g02278 492 MobiDBLite consensus disorder prediction 85 107 - -
Gma13g02278 492 Coils Coil 123 143 - -
Gma13g02278 492 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Gma13g02278 492 Coils Coil 190 224 - -
Gma13g02278 492 MobiDBLite consensus disorder prediction 89 107 - -
Gma13g02278 492 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 269 488 IPR010061 GO:0004491
Gma13g02278 492 ProSiteProfiles GTD-binding domain profile. 117 215 IPR007656 -
Gma13g02278 492 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 268 303 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02278 Gma-Chr13 37602561 37610482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02278 256 488 Aldehyde Dehydrogenase Gene Family AT2G14170 68.726 1.24e-109 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02278 K00140 - gmx:100783569 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02278 13 37602561 37610482 Gma13g02278 13 37602561 37610482 ECH
Gma15g00560 15 4636008 4636823 Gma13g02278 13 37602561 37610482 GST
Gma07g01787 07 39005027 39007185 Gma13g02278 13 37602561 37610482 PCT
Gma08g00625 08 5200878 5202185 Gma13g02278 13 37602561 37610482 PCT
Gma13g02278 13 37602561 37610482 Gma07g01787 07 39005027 39007185 PCT
Gma13g02278 13 37602561 37610482 Gma08g00625 08 5200878 5202185 PCT