Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02256 ATGAGGACTTCTCATATGGAGATTTCATCAATCAGAGGGTTGCCTGAAATGGGGATAATAGAGGATCCTAACTTCCTCCATCACTGGCAGTTAAACTCTATTGATACAACTAGCCTAACAGGTGCTCCTTTTGGAGAGATTTTACAAAAGCACTCATTCTCTGATAACTCAAATTTCAACCCCAAAACATCCATGGAAACATCACCAACTGGAATTGAAAGACCTGCAAAACAGCTCAGAAATAACAGCTGGAATCACAACAAAAGTCAACAACAGACACCAGAAACACAATTTGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACACGAGCGAATTGGGACTAGTGAAACCTAAGGTGGAGATGGTGTGTCCTAAAATCAACAACAACACTCTCGCAGACATGTTGATCTCTCAAGGAAACTTAGGAAATCAAAACTATCTTTTCAAGGCTAGCCAGGAGGCCAAAAAGATTGAAACACGTCCTAAACTTTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGAAGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAATTGTGAAGAAATCCCGGCTATCTAGTGATGCTGAAGACTCGTCTTCTTCAGAAACCGGTGATACATTTGATGAGGCACTACCTGAAATTGAAGCAAGATTTTATGAAAGAAATGTCCTCATAAGAATACATTGTGAGAAGAATAAAGGAGTCATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCTTGACATTTGGGAGTTTCATCCTGGATATAACAATTATTGCTCAGATGGATATGGAATTCTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCCTTTTCATATTTCGTGTGA 1047 0.4002 MRTSHMEISSIRGLPEMGIIEDPNFLHHWQLNSIDTTSLTGAPFGEILQKHSFSDNSNFNPKTSMETSPTGIERPAKQLRNNSWNHNKSQQQTPETQFASCSNLLSFVNSNYTSELGLVKPKVEMVCPKINNNTLADMLISQGNLGNQNYLFKASQEAKKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSRLSSDAEDSSSSETGDTFDEALPEIEARFYERNVLIRIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSYFV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02256 348 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Gma13g02256 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 232 IPR036638 GO:0046983
Gma13g02256 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Gma13g02256 348 Coils Coil 207 234 - -
Gma13g02256 348 Gene3D - 167 239 IPR036638 GO:0046983
Gma13g02256 348 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 7 347 - -
Gma13g02256 348 PANTHER BHLH TRANSCRIPTION FACTOR 7 347 - -
Gma13g02256 348 CDD bHLH_AtNAI1_like 171 243 - -
Gma13g02256 348 MobiDBLite consensus disorder prediction 52 72 - -
Gma13g02256 348 SMART finulus 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02256 Gma-Chr13 37417504 37420694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02256 168 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.656 3.13e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g02256 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02256 - - gmx:100798018 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02256 13 37417504 37420694 Gma13g02256 13 37417504 37420694 ECH
Gma15g00581 15 4813677 4817270 Gma13g02256 13 37417504 37420694 GST
Gma07g01800 07 39170152 39172080 Gma13g02256 13 37417504 37420694 PCT
Gma13g02256 13 37417504 37420694 Gma07g01800 07 39170152 39172080 PCT