Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02254 ATGTTCGCCGGAGGAATTTTCCGGTACGGTTCTCCCACTACTCTGTTATTCCTCTGTCTCGTTGCTTCCACCCTCTCAGATGAACTTCAACTACTCATGAAGTTCAAGTCCTCTATACAAAGTTCCAACGCTAATGTTTTCAGTTCATGGACACAAGCAAATTCTCCCTGCCAATTCACCGGGATTGTATGCAACTCCAAAGGCTTTGTTTCAGAAATCAACCTTGCGGAGCAACAACTAAAGGGTACTGTTCCTTTTGATTCACTTTGCGAGCTTCAATCGCTTGAGAAGATATCTTTGGGGTCCAACGTCTACTTGCATGGCAGCATCAGTGAGGATTTGAGGAAGTGCACCAACTTGAAGCAGCTGGACTTGGGTAATAATTCATTCACTGGTGAAGTTCCTGATCTGTCAAGTTTGCACAAGTTGGAGTTGTTGAGTTTAAACTCCAGTGGAATTTCTGGGGCGTTTCCATGGAAATCATTGGAAAATCTAACTAGTCTCGAGTTTCTGAGTCTTGGAGATAACCTGTTGGAGAAAACTCCTTTCCCTTTGGAGGTCTTAAAGCTTGAAAATTTGTATTGGCTTTACCTCACGAATTGCAGCATCACTGGGAATATTCCTTTAGGGATTGGGAATTTAACTCGGCTTCAGAATCTTGAGCTTTCTGACAACCATTTGTCTGGTGAGATTCCACCTGATATTGTGAAGCTTCAGAGGCTGTGGCAGCTTGAGTTGTATGATAACTATTTGAGTGGGAAAATCGCTGTTGGATTTGGCAACCTTACTAGTCTTGTTAACTTTGATGCTTCTTATAATCAGCTTGAAGGCGATCTTTCTGAGCTAAGGTCCTTGACAAAACTTGCATCCCTTCATCTTTTTGGGAACAAGTTCTCTGGAGAAATTCCAAAAGAGATTGGAGATCTCAAGAATCTCACAGAACTTTCTCTTTATGGTAACAATTTCACTGGCCCTCTTCCTCAAAAGCTTGGCTCGTGGGTTGGCATGCAGTACCTTGATGTTTCAGACAATTCTTTTTCTGGTCCTATACCACCTCACCTATGCAAGCACAACCAAATCGATGAACTAGCACTGTTGAACAACAGCTTCAGTGGAACTATACCAGAAACATATGCAAACTGCACATCTTTGGCTCGATTTCGCCTGAGCAGGAATTCACTTTCTGGTGTTGTTCCTTCAGGCATATGGGGCTTGGCAAATTTGAAACTATTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATTGCCAAAGCAAAATCTCTGGCTCAACTGCTGTTATCTTACAATAAGTTCTCAGGTGAGTTGCCATTGGAAATCTCAGAAGCTTCTTCACTGGTGTCAATTCAACTAAGTTCAAATCAATTTTCTGGTCACATTCCAGAAACCATTGGCAAGTTGAAGAAACTAACTAGTCTAACTTTGAATGGGAACAATCTTTCTGGTATTGTACCAGATTCCATTGGTTCTTGTACTTCTCTTAATGAGATAAACCTTGCTGGTAACTCTCTTTCTGGGGCTATACCAGCTAGCGTTGGTTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCTAGTCTATCATCTCTCAGACTTAGCCTTCTTGACTTATCAAACAACCAGTTGTTTGGTTCCATACCAGAACCACTGGCTATTTCAGCCTTCAGAGATGGGTTCATGGGAAACCCTGGTTTATGCAGCAAGGCTTTAAAAGGTTTCAGACCATGTTCAATGGAATCTAGCAGCTCTAAGCGATTCAGAAACCTATTAGTCTGTTTCATTGCTGTTGTAATGGTTCTGCTTGGAGCATGTTTCCTCTTCACAAAACTAAGGCAGAACAAGTTTGAGAAGCAACTGAAGACTACTTCATGGAATGTCAAGCAGTACCATGTGCTAAGATTCAATGAGAATGAAATAGTTGATGGGATCAAGGCTGAGAATTTGATTGGAAAAGGAGGATCCGGGAATGTTTATAGGGTTGTGCTTAAAAGTGGGGCAGAATTTGCAGTGAAACATATATGGACTTCAAATCTAAGTGAGAGGGGAAGTTGTAGGAGCACCTCATCTATGCTAAGAAGGAGTTCAAGGTCACCTgaatttgatgcagaagtggccactcttagctcaataaggcatgtgaatgtggtgaagctctattgtagcatcacaagtgaagatagcagtttgcttgtttatgagtttttaccaaatgggagcttgtgggacaggttacacacgtgtaagaataagtctgagatggggtgggaggttaggtatgacattgctttgggtgctgctagaggattggagtacctgcaccatgggtgtgatagacctgttatacatagggatgtcaaatccagtaacatattgctggatgaggaatggaagccaaggattgctgattttggccttgcaaagattcttcagggaggagcaggcaattggaccaatgtcattgctggaacagttggatacatgcctcctgAGTATGCCTACACTTGTAGGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGGGTAGTGCTGATGGAGTTGGTAACGGGGAAGAGGCCTATGGAGGCAGAGTTTGGAGAGAATCATGATATTGTGTATTGGGTATGCAACAATATTAGGAGCAGAGAAGATGCTCTTGAATTGGTGGATCCTACCATTGCAAAGCATGTCAAAGAGGATGCCATGAAGGTGTTGAAAATCGCAACACTGTGCACCGGGAAAATTCCAGCTTCAAGACCCTCAATGAGAATGTTGGTTCAAATGCTGGAAGAGGCAGATCCATTTACCACAACCAAAATGATTGTGACCATTGATGCTTAA 2895 0.3637 MFAGGIFRYGSPTTLLFLCLVASTLSDELQLLMKFKSSIQSSNANVFSSWTQANSPCQFTGIVCNSKGFVSEINLAEQQLKGTVPFDSLCELQSLEKISLGSNVYLHGSISEDLRKCTNLKQLDLGNNSFTGEVPDLSSLHKLELLSLNSSGISGAFPWKSLENLTSLEFLSLGDNLLEKTPFPLEVLKLENLYWLYLTNCSITGNIPLGIGNLTRLQNLELSDNHLSGEIPPDIVKLQRLWQLELYDNYLSGKIAVGFGNLTSLVNFDASYNQLEGDLSELRSLTKLASLHLFGNKFSGEIPKEIGDLKNLTELSLYGNNFTGPLPQKLGSWVGMQYLDVSDNSFSGPIPPHLCKHNQIDELALLNNSFSGTIPETYANCTSLARFRLSRNSLSGVVPSGIWGLANLKLFDLAMNQFEGPVTSDIAKAKSLAQLLLSYNKFSGELPLEISEASSLVSIQLSSNQFSGHIPETIGKLKKLTSLTLNGNNLSGIVPDSIGSCTSLNEINLAGNSLSGAIPASVGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPEPLAISAFRDGFMGNPGLCSKALKGFRPCSMESSSSKRFRNLLVCFIAVVMVLLGACFLFTKLRQNKFEKQLKTTSWNVKQYHVLRFNENEIVDGIKAENLIGKGGSGNVYRVVLKSGAEFAVKHIWTSNLSERGSCRSTSSMLRRSSRSPEFDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCKNKSEMGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILQGGAGNWTNVIAGTVGYMPPEYAYTCRVTEKSDVYSFGVVLMELVTGKRPMEAEFGENHDIVYWVCNNIRSREDALELVDPTIAKHVKEDAMKVLKIATLCTGKIPASRPSMRMLVQMLEEADPFTTTKMIVTIDA 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02254 964 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Gma13g02254 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Gma13g02254 964 Gene3D Ribonuclease Inhibitor 104 331 IPR032675 -
Gma13g02254 964 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 13 957 - -
Gma13g02254 964 Pfam Protein kinase domain 665 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02254 964 SMART serkin_6 662 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02254 964 SMART LRR_typ_2 525 549 IPR003591 -
Gma13g02254 964 SMART LRR_typ_2 477 500 IPR003591 -
Gma13g02254 964 SMART LRR_typ_2 214 238 IPR003591 -
Gma13g02254 964 SMART LRR_typ_2 309 333 IPR003591 -
Gma13g02254 964 SMART LRR_typ_2 165 190 IPR003591 -
Gma13g02254 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Gma13g02254 964 Pfam Leucine rich repeat 455 514 IPR001611 GO:0005515
Gma13g02254 964 SUPERFAMILY Protein kinase-like (PK-like) 648 948 IPR011009 -
Gma13g02254 964 SUPERFAMILY L domain-like 388 569 - -
Gma13g02254 964 Gene3D Ribonuclease Inhibitor 335 596 IPR032675 -
Gma13g02254 964 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Gma13g02254 964 SUPERFAMILY L domain-like 188 447 - -
Gma13g02254 964 SUPERFAMILY L domain-like 24 276 - -
Gma13g02254 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 957 - -
Gma13g02254 964 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Gma13g02254 964 Gene3D Phosphorylase Kinase; domain 1 645 753 - -
Gma13g02254 964 Gene3D Ribonuclease Inhibitor 21 103 IPR032675 -
Gma13g02254 964 ProSiteProfiles Protein kinase domain profile. 662 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02254 Gma-Chr13 37400333 37404365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02254 13 961 Receptor kinase-like Gene Family AT1G09970 56.889 0.0 1054
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma13g02254 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02254 - - gmx:100811489 1843.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02254 13 37400333 37404365 Gma13g02254 13 37400333 37404365 ECH