Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02231 ATGCTTGAAGCTTGGCTTTCTCTCAAGAAGACCCTTCAATGCAAACCACAACCAAATCAAGTTCATGATCCAAAGACTACTAGGCAGCAAAAGGGTAATCAGAGAACAAAGTTAAGTAATCTTGAGAGTTCAAATACCAAAGATTTCATCCAAGGAAGCAAGGGGCACTTAAAAAAATCACTGAGTTATAGAGGGGACATTGACATCACTAGTCCCATAACTAATGAAATTGTTCTTGATAGCTCAAACAATGGAACCTCTCGATGTTGTCCTTGTCCTCAAAGCAATAGCGGCAACAAAGCTTCGGAAGGTTCTCATAGAACACGAAGGTCAGCTACATCTTCAAAGATAACAATGACATATCATGTTGATTACAATGAAGCAAATGTCTCCTCCAATACAAGTACGCTGGTTCAGATGGATTCTGATGGTTGTTCAACATTGACATGCCATAAATGTGGCAAGAAATTGAAAAATCTCGATGCTGTAGAAGCACATCATATTTCCGAGCATTCAGTCACTGAACTTGAAGAAGATTCATCTAGACAGATTATAGAAACAATATGTGGAAGTGGAACAAGCTCTATTAATAATTCCGAAAACATGGTGGGGCAGATTGATTGCATTTTAAAGGTTCTGAATGTACCAAAAACCTTAGCTTGCTTTGAGGAATACAGAGCAAAGGTGAAGGATAACGCTGAGAAGCTACAGAAGAAGCATCCACGTTGTGTGGCTGATGGAAATGAGCTTTTAAGGTTCCATGGCACAACTATTTCATGTTCTCTTGGCACAAACAGTTCTAGCCTGTGCACTTTAGACTATTGTGGTATATGCCAAATCCTGAGAAATGGCTTCTTCACCAATAAGGAATTCCATGGTGCATCGGGGGTTTACACCACTTCCACAAGTAGGAAAGCCTTTGAATCCATTTCCATTATGACATCCCATGAGAGGCCATTTGCAAGAAAGTCTGTCATAGTGTGCAGAGTAATAGCTGGGAGAATTTATAGTCCTCTTGAAGAAATTGAAGAAGAAAGGGCTGATTCAGAGTTTGATTCATTGTCAGAAAATACAAATGGTCATTCAGATGCTGAGGAACTCTACGTGTTAAATCCCAAAGCCCTTCTTCCTTGCTTTGTGATAATCTACAAACAGCAAACAGACAAGGCTAGGAGATTAGGAGGTTCAGCTCAAGCTTAA 1200 0.3983 MLEAWLSLKKTLQCKPQPNQVHDPKTTRQQKGNQRTKLSNLESSNTKDFIQGSKGHLKKSLSYRGDIDITSPITNEIVLDSSNNGTSRCCPCPQSNSGNKASEGSHRTRRSATSSKITMTYHVDYNEANVSSNTSTLVQMDSDGCSTLTCHKCGKKLKNLDAVEAHHISEHSVTELEEDSSRQIIETICGSGTSSINNSENMVGQIDCILKVLNVPKTLACFEEYRAKVKDNAEKLQKKHPRCVADGNELLRFHGTTISCSLGTNSSSLCTLDYCGICQILRNGFFTNKEFHGASGVYTTSTSRKAFESISIMTSHERPFARKSVIVCRVIAGRIYSPLEEIEEERADSEFDSLSENTNGHSDAEELYVLNPKALLPCFVIIYKQQTDKARRLGGSAQA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02231 399 MobiDBLite consensus disorder prediction 15 54 - -
Gma13g02231 399 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 385 - -
Gma13g02231 399 MobiDBLite consensus disorder prediction 15 51 - -
Gma13g02231 399 MobiDBLite consensus disorder prediction 89 113 - -
Gma13g02231 399 Coils Coil 219 239 - -
Gma13g02231 399 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 385 - -
Gma13g02231 399 SUPERFAMILY ADP-ribosylation 178 388 - -
Gma13g02231 399 ProSitePatterns Zinc finger C2H2 type domain signature. 150 171 IPR013087 -
Gma13g02231 399 Gene3D - 177 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02231 Gma-Chr13 37231253 37233261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02231 4 82 C2H2 Transcription Factor Family AT5G54630 34.615 8.05e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02231 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02231 - - gmx:100807216 807.364