Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02228 ATGGAGTATGAAGATGAAGATTGGCTTTGTGTCACTATGGATGAGTTTTCTCTTGCTACTGAAAATGGTTGTAACAGGAAGAGGAACTTTGATGATGACACGAAAGAGTACAAATCAAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTTTTGATGCTGCGGTCTATAGTACCTATAATCACAAATATGAATAAAGCAATGATTGTTGAAGATGCTATCACCTACATTGAGAAGCTGCAAGACAAGGTTCAGAGTCTCAGCCAAGAGCTTCACCAAATGGAAGCAACTTCAGAGGAAACAGCAGAGACAAAAATAGTTGAAATTGATGCTGCGGAAGATATGAAGAATTGGGGGATACAGGAAGAGGTCATAGTGGAAGAAATAAACGAGAATAAACTCTGGGTTAAGATCATTGTTGAGAAGAAAAGGGGAAGATTCAGCAGATTGATGGAGGCCCTCAATAATTTTGGCATTGAACTCATTGACACCAATCTCACAACCACAAAAGGAGCATTTCTGATTACAAGCTTCATAAAGGGCAAGAACGGTGAAAGACTTGAAATTCATCAAACCAAGAATTTATTGCAAGATATCATCAATGACATATAG 627 0.3923 MEYEDEDWLCVTMDEFSLATENGCNRKRNFDDDTKEYKSKNLETERRRREKLSSRLLMLRSIVPIITNMNKAMIVEDAITYIEKLQDKVQSLSQELHQMEATSEETAETKIVEIDAAEDMKNWGIQEEVIVEEINENKLWVKIIVEKKRGRFSRLMEALNNFGIELIDTNLTTTKGAFLITSFIKGKNGERLEIHQTKNLLQDIINDI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02228 208 PANTHER TRANSCRIPTION FACTOR DYT1 10 208 - -
Gma13g02228 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 102 IPR036638 GO:0046983
Gma13g02228 208 SMART finulus 42 91 IPR011598 GO:0046983
Gma13g02228 208 Pfam Helix-loop-helix DNA-binding domain 39 86 IPR011598 GO:0046983
Gma13g02228 208 Gene3D - 28 102 IPR036638 GO:0046983
Gma13g02228 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Gma13g02228 208 Coils Coil 75 109 - -
Gma13g02228 208 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02228 Gma-Chr13 37195077 37196390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02228 37 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 45.763 2.98e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g02228 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02228 - - gmx:100806159 387.497