Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02212 ATGATTATGGATATCACAAGTCTCATACTTGCTCTGTTCATAGTTTACTGTTTTTGTCAGTGCTTAAGTTCTGCCAACAATACCATTACATCAGGCCAATACATCACAGACCCTCACACTCTCATCTCCCCTAACAGTGTCTTCAAGTTAGGATTCTTCAGCCCTCAAAACTCATCAAATCGCTACCTGGGAATCTGGTATCTCTCTGACTCCAATGTCATATGGGTAGCTAACAGAAACCAGCCACTAAAGACGAGCTCTTCCGGAACTGTTCAAATTTCTGAGGATGGCAATCTTGTGGTTCTAGATAGCAACAAAAGGGTTGTTTGGTCATCAAATGTGACACATAATATTGCAACCAATTCAACTGCCAAACTTTTAGAGACCGGAAATCTAGTCCTGATAGATGATGCCACAGGAGAAAGTATGTGGGAGAGTTTCCGACATCCTTGTCATGCTCTCGTGCCAAAGATGAAACTAAGTATTACCCAAAAAACATACGAGAAAGTACGCATAACATCATGGAGAAGTCCCTCTGATCCTTCTCTTGGGTACTACTCTGCTACTCTTGAACGCCCCAACATTCCAGAAGTGTTTTACTGGATTAATGAAACGCAACCGTATTATCGGACTGGTCCATGGAATGGTCAGATTTTTATTGGCTCGCCTCAGATGTCACGTGGTTATCTATATGGATGGAATATGATGAATGATGAAGATGATGGAACTGTCTATCTTTCTTACAATTTGCCAAGTCAATCTTACTTTGCAGTCATGACCTTGAATCCACAGGGTCACCCTACAATCGAATGGTGGAGGGACCGAAAGTTAGTGTGGAGGGAGGTGTTGCAAGGAAACTCATGTGATCGTTATGGTCATTGTGGGGCATTTGGAAGCTGTAATTGGCAGAGTTCACCAATATGCAACTGTTTGAGTGGATATAAACCTAAATATGTAGAGGAGTGGAATAGAAAAAATTGGACTAGTGGATGTGTGAGGAGTGAGCCACTGCAATGTGGTGAACAAACAAATGGAAGTGAAGTCAGCAAAGATGGGTTTTTGAGGCTTGAGAATATGAAAGTTTCAGACTTTGTACAAAGGTTAGATTGTTTGGAAGATGAATGCAGAGCACAGTGTTTGGAGAATTGCTCTTGTGTGGCCTATGCATATGACAATGGCATAGGATGCATGGTTTGGAGTGGAGACTTGATCGACATACAGAAGTTCTCAAGTGGAGGGATTGATCTTTACATTCGTGTGCCACCTTCAGAATCAGAACTTGAAAAACATTCAGACAAAAGAAGACACAAGACAATTTTAATTCCAGTTGGAATAACTATAGGAATGGTTGCCTTGGCTGGCTGTGTTTGTCTCTCACGGAAATGGACTGCTAAATCAATAGGAAAAATAAATTCACAACGGCAAGGAATGAACGAAGATCAGAAACAAGTCAAATTGAATGATCACTTACCGTTTTTTAGTTTTGAAGAACTTGTAAATGCTACAAATAATTTTCACTCGGCCAACGAGCTAGGTAAAGGAGGTTTTGGTTCAGTATATAAGGGACAATTGAAAGatggacacgaaatagcagtgaaaagactttcaaaaacctcaggacaagggctagaagagtgtatgaatgaggtattagtgatttcaaggcttcaacatcgcaatcttgtcagacttcttggttgctgtattgaacaggaggaaaatatgttggtatacgagtatatgcctaacaagagtttggatGTAATATTATTTGATCCAGCTAAAAAGCAGGATCTAGATTGGCCAAAACGCTTCAATATAATTGAAggaatctctaggggtttgctttatctccacagagattctagaataaaaattatacacagagacttaaaggttagtaacatcttgttggatggagagctgaatccaaaaatatcagactttggtatggccaaaatatttggaggaaatgatatgcaagccaatactagaagggttgttggaacatttggttatatgcctccagaatatgcattccaagggttggtttctgagaaattagatgtctttggttttggagtcttgttgctagagattattagtgggagaaaaatcagcagctgcttcgatcatgaccaatcattgagtctcttaggatttGCTTGGAAATTATGGAATGAAAAGGACATCCAATCACTGATAGACCCAGAAATATCGAATCCAAATAATGTGAATGACATTGTGAGATGCATACACATAGGACTTCTTTGTTCACAAGAACTTGCAAAAGAAAGGCCACTTATGGCTACAGTAGTTTCAATGCTTAATAGTGAGATTGTCGATCTTCCTCCCCCATTAAATCCCGCATTCATCAAAAGGCAAATTGTATCATGTGCAGATTCATCTCAACAGAATCACATAACACAGTCCATCAACAATGTTACTGTCACAGGCATACAAGACAATCCAGATCAGACATTGATATTTATTGTCAGAACCTATGAACTTGATTTTCTATTTTTATCATCAAACTTGAAACGGAGTCTAACCTCGGTCAACAACTGCGGCTTCTTAAATATGATATTCTGGTCGCGGGACGCGTTTCCATTCGATGAAGTTGACTTCACTATTCACGGTTTCAAGATATGGACAAACCTGGCCCTCTAG 2670 0.3225 MIMDITSLILALFIVYCFCQCLSSANNTITSGQYITDPHTLISPNSVFKLGFFSPQNSSNRYLGIWYLSDSNVIWVANRNQPLKTSSSGTVQISEDGNLVVLDSNKRVVWSSNVTHNIATNSTAKLLETGNLVLIDDATGESMWESFRHPCHALVPKMKLSITQKTYEKVRITSWRSPSDPSLGYYSATLERPNIPEVFYWINETQPYYRTGPWNGQIFIGSPQMSRGYLYGWNMMNDEDDGTVYLSYNLPSQSYFAVMTLNPQGHPTIEWWRDRKLVWREVLQGNSCDRYGHCGAFGSCNWQSSPICNCLSGYKPKYVEEWNRKNWTSGCVRSEPLQCGEQTNGSEVSKDGFLRLENMKVSDFVQRLDCLEDECRAQCLENCSCVAYAYDNGIGCMVWSGDLIDIQKFSSGGIDLYIRVPPSESELEKHSDKRRHKTILIPVGITIGMVALAGCVCLSRKWTAKSIGKINSQRQGMNEDQKQVKLNDHLPFFSFEELVNATNNFHSANELGKGGFGSVYKGQLKDGHEIAVKRLSKTSGQGLEECMNEVLVISRLQHRNLVRLLGCCIEQEENMLVYEYMPNKSLDVILFDPAKKQDLDWPKRFNIIEGISRGLLYLHRDSRIKIIHRDLKVSNILLDGELNPKISDFGMAKIFGGNDMQANTRRVVGTFGYMPPEYAFQGLVSEKLDVFGFGVLLLEIISGRKISSCFDHDQSLSLLGFAWKLWNEKDIQSLIDPEISNPNNVNDIVRCIHIGLLCSQELAKERPLMATVVSMLNSEIVDLPPPLNPAFIKRQIVSCADSSQQNHITQSINNVTVTGIQDNPDQTLIFIVRTYELDFLFLSSNLKRSLTSVNNCGFLNMIFWSRDAFPFDEVDFTIHGFKIWTNLAL 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02212 889 SMART blect_4 32 150 IPR001480 -
Gma13g02212 889 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Gma13g02212 889 Gene3D Transferase(Phosphotransferase) domain 1 581 782 - -
Gma13g02212 889 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Gma13g02212 889 SMART serkin_6 505 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02212 889 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 822 - -
Gma13g02212 889 Gene3D - 21 147 IPR036426 -
Gma13g02212 889 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
Gma13g02212 889 Gene3D Phosphorylase Kinase; domain 1 465 580 - -
Gma13g02212 889 CDD STKc_IRAK 511 777 - -
Gma13g02212 889 SUPERFAMILY Protein kinase-like (PK-like) 488 808 IPR011009 -
Gma13g02212 889 Pfam D-mannose binding lectin 73 176 IPR001480 -
Gma13g02212 889 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Gma13g02212 889 ProSiteProfiles Protein kinase domain profile. 505 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02212 889 CDD B_lectin 26 150 IPR001480 -
Gma13g02212 889 Pfam PAN-like domain 348 406 IPR003609 -
Gma13g02212 889 Pfam Protein tyrosine and serine/threonine kinase 508 775 IPR001245 GO:0004672|GO:0006468
Gma13g02212 889 CDD PAN_AP_plant 336 421 - -
Gma13g02212 889 SMART ntp_6 348 420 IPR003609 -
Gma13g02212 889 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 216 IPR036426 -
Gma13g02212 889 PIRSF SRK 1 823 IPR024171 GO:0004674
Gma13g02212 889 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 20 822 - -
Gma13g02212 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02212 Gma-Chr13 37069310 37074578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02212 493 818 Receptor kinase-like Gene Family AT4G11530 54.354 2.26e-116 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma13g02212 PK_Tyr_Ser-Thr 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02212 - - gmx:100800296 1693.32