Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02204 ATGGGGAAAAAATCGAATCCGGCGGAGGGAGAAGAAGCGGTGCCGGAGCATCTGCGGTGCAGCCGTACGGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAAAACCTAAAGCTGTGCGAGATTCACTATGTGCAAGCTCGGCGTCGGCAGCACAAGAAGACGCTGAAGCTGAAGAGAAAGAGGCAAAACGACGCCGTTGAGGCTCAGATTGGGGCAAAGCGGGACCGAAAATCGAGAGAGGCATTGGTGAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATtgaatttgaatttgaatttgcatttgtattccaatcacgagttgaagaaggaacttccgaatggtGTTATGGCTATTGCGTCCAATGTGGCTTCTTCTCGTTACTTCAGGTCCAAGAATGCTGACAGCGGCTCTGTTAGTAAGTTGCAGTGTGGACGAAGCATGAACAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAGTCTTGTAATGTGTTCAAGCTGCCAGAGAGAGTTTTTCTGCATGGAGTGCATTAAACAACGGTATTTTGATACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGATTGCTTGTCAAGTCAATACGAAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAACAGAGTTGATGGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTAAAACAAATAAAAGAAGACCACCATGTAGATGTAGAAGAAACAGCAAAAACTAAAGGCAAAAGAACTTCTGATATTCTCATCAAGCCGGTTGATTTTGTCTGCAACGAGAAAAATTACTGCAATTACTGCAAAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGTCTTTGCTTAAGTTGTTCTCAGGCATTAAGTCAAGGAAGCACCTCTGAAGAAATCAACTCTTCTATATCCAACCTACCTGACAAAATAAATGCATGCATTTCTAGTGAAAGTCACCTTTTGGATGATAAGGTCATTTCTAATGGAAATTTAACTGATACCTCAACATTACTTGAGTGGACAAATTGTAATGGTGCTGGCATTGTGTCATGCCCACCTACAAAGCTTGGTGATTGTGGTGATAACCACCTTGATTTGAAATATGTCTTTCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTCGGATAAAAGTTCGAGCTGCTCACTGTGTGTTGACAAAGATCATAAAACTAGCAGATACAAGCAGTTACCGGAAGCAGCTCAAAGAGAAGATTCCAATGATAATTACTTATTTTATCCTACAATTTTGGACATCAGTTGCAATCATTTTGAACACTTTCGGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCAATGTACACCAAACCTTAGTTGGGATCCAGTGGTCATGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGACTGGTTTGAGGTGGAGATTAACGTTAGTCAGTACTTTATTGGGCCACTTAAATGTCAACCTCAGAAAAATACTTGGCATGAGATGTTGAAACTTAAAGGATGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTTCCGATTCAAGAATACATGAATCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGACGAAGGAGATGATTTCGTGACAAATCTCTGTTACGACTCATATGATATGGTTAATATTATGGCATATAGCATGGACATTCCTCTCTCTACAGATCAACTTGCTAAAATAAGTAAGTTGTTGAAAAAACACAAAACTCTATGTCAGAAGGTGTCATCTAAAACTACTAGTGAGCATTCAGAAGACAGGGAACAAAATGGAATGCATAGTATAGTAAAAGAAGGAACTGACTTTCTCAGGAGAGTCAATAGAACATCTTCCATCTCTACTGAAGCCAAAACGATATCTAATCAGAAGTTAGACACCAATATTTCTGATGATGAAGAATGTGGTTCCGATTCTGAAACTGAAAAGGCACAAAGCTCTTTACCTTCCCACAGGAGGGTTCTAAGCACTGAACGGTCTCCAGATCATAATCCTAGAAATCCCTTTGAAAACTCAAACAGTGATAAAGGGAAGAAGTTTACTGAGAATTCTGCTGCTCATTGGGATGTCTTTCGAAGACAAGATGTGCCCAAGCTCTTAGAATACCTCAAAAGACACTCTGATGAATTTTCTTATACTAGTGAATGTCATGAGAAGatggttcatccaattctggatcagagcttctttcttgacaatactcacaagatgagacttaaggaggagtttaaaattgaaccatggacttttgagcaacatgttggagaagctgtcatcattccttctggatgtccataccagattaggaatcctaagtgttgtgtacatgtggaattggaatttgtgtcccctgagaatgtctccgagtgtatccagttgattgatgaggtccggctgcttcctgaagaccataaagcaaaagtagaaaagctggagGTGAAAAAAATGGCTCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAAAACATGA 2847 0.3586 MGKKSNPAEGEEAVPEHLRCSRTDGRQWRCRRRVKENLKLCEIHYVQARRRQHKKTLKLKRKRQNDAVEAQIGAKRDRKSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLNLNLHLYSNHELKKELPNGVMAIASNVASSRYFRSKNADSGSVSKLQCGRSMNKGRRKKCHWCQRSDSWSLVMCSSCQREFFCMECIKQRYFDTQNEVKMACPVCRGTCTCKDCLSSQYEDSESKEYLAGKNRVDGILHFHYLVCMLLPVLKQIKEDHHVDVEETAKTKGKRTSDILIKPVDFVCNEKNYCNYCKTPILDLHRSCLSCSYSLCLSCSQALSQGSTSEEINSSISNLPDKINACISSESHLLDDKVISNGNLTDTSTLLEWTNCNGAGIVSCPPTKLGDCGDNHLDLKYVFPLSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTILDISCNHFEHFRKHWGKGHPVVVRDVLQCTPNLSWDPVVMFCTYLERSMTRYENNKDLLEACLDWFEVEINVSQYFIGPLKCQPQKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPLSGLLNLAANLPQGSTKHDIGPYVYISYGCADEGDDFVTNLCYDSYDMVNIMAYSMDIPLSTDQLAKISKLLKKHKTLCQKVSSKTTSEHSEDREQNGMHSIVKEGTDFLRRVNRTSSISTEAKTISNQKLDTNISDDEECGSDSETEKAQSSLPSHRRVLSTERSPDHNPRNPFENSNSDKGKKFTENSAAHWDVFRRQDVPKLLEYLKRHSDEFSYTSECHEKMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSECIQLIDEVRLLPEDHKAKVEKLEVKKMALYSMSTAIKEIRELTCKT 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02204 948 PANTHER PROTEIN B160 11 947 - -
Gma13g02204 948 MobiDBLite consensus disorder prediction 693 712 - -
Gma13g02204 948 SMART cupin_9 588 911 IPR003347 -
Gma13g02204 948 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 947 IPR045109 GO:0032454|GO:0033169
Gma13g02204 948 Pfam JmjC domain, hydroxylase 797 894 IPR003347 -
Gma13g02204 948 ProSiteProfiles Zinc finger RING-type profile. 174 220 IPR001841 -
Gma13g02204 948 MobiDBLite consensus disorder prediction 737 792 - -
Gma13g02204 948 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
Gma13g02204 948 SUPERFAMILY Clavaminate synthase-like 481 931 - -
Gma13g02204 948 Pfam WRC 15 55 IPR014977 -
Gma13g02204 948 Coils Coil 81 108 - -
Gma13g02204 948 Gene3D Cupin 480 920 - -
Gma13g02204 948 MobiDBLite consensus disorder prediction 689 712 - -
Gma13g02204 948 ProSiteProfiles JmjC domain profile. 607 911 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02204 Gma-Chr13 37001858 37007267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma13g02204 JmjC 2.5e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02204 K15601 - gmx:100799234 1922.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00628 15 5144401 5149832 Gma13g02204 13 37001858 37007267 GST
Gma07g01834 07 39531839 39538119 Gma13g02204 13 37001858 37007267 PCT
Gma08g00573 08 4727377 4733349 Gma13g02204 13 37001858 37007267 PCT
Gma13g02204 13 37001858 37007267 Gma07g01834 07 39531839 39538119 PCT
Gma13g02204 13 37001858 37007267 Gma08g00573 08 4727377 4733349 PCT