Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02202 atggggagagcaccttgttgtgacaagaatggcctcaagaaaggaccatggacaaccgaggaggaccagaaactcattgattacattcagaaacatggatatggcaattggaggacactcccaaagaatgctgGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAACTACATAGCATTCTTGGCAACAAATGGTCTGCCATTGCATCTCGCTTACCAGGAAGGACTGACAATGAAATAAAGAATTATTGGAACACTCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCAGTGACACACAGTCCTCGACTTGATCTATTGGACATCAATTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATCAACATCCAAAGGCTCCTTGGCATGCACCAGTACGTGGTGAACCCTGAGCTTTTAAAATTGGCTTCTTCACTCTTCTCCACCTCGCAGCAACACAATCATGACCCTGATGACATGTGTGCTCAAAAAGGTCAACAGAATCAGCTTTGCGATCCTCAAATTCAGAACCATGTTCCACACTTTGTCCAATATCAAGATCCAATTCAAGAAGTGCCTGCATGCAGCACCATGTTCAGCACCCCTTGTTTTTCAATGCCTCTAACTCAACCACAGTTGGTTGAGCCAAATAATGTGGACCAATATACATCATCAACTTTCACAGACTTCAGTTACCAACAACTAAGTGATTGGCACAAAGATGGGATTGCGTTAAGCACCTTAACAGATGACTATATGCCTCAGTTATCAAGCTATAATAATTATTATAGTTCTAATAGTCATCAAAATCTCATGTATCCTCAAGTGTCCGAACCTTCAACTTTTCATTCCAATAACAGCAATCATCAGAACTTCAGCTTCGCTTCAGTTCTATCAACACCTTCGTCAAGCCCCACACCGCTGAATTCGAACTCCACGATAATCAATGGGAGCAACACAGAAGACGAGAGAGACCAAAGCTATGACAGTAGTAACATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1128 0.3626 MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDINSILNASFYGSSQINIQRLLGMHQYVVNPELLKLASSLFSTSQQHNHDPDDMCAQKGQQNQLCDPQIQNHVPHFVQYQDPIQEVPACSTMFSTPCFSMPLTQPQLVEPNNVDQYTSSTFTDFSYQQLSDWHKDGIALSTLTDDYMPQLSSYNNYYSSNSHQNLMYPQVSEPSTFHSNNSNHQNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSSNMLKFEIPDILDVNEFM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02202 375 Gene3D - 13 66 - -
Gma13g02202 375 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma13g02202 375 CDD SANT 69 112 IPR001005 -
Gma13g02202 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 304 370 - -
Gma13g02202 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 272 - -
Gma13g02202 375 CDD SANT 16 61 IPR001005 -
Gma13g02202 375 MobiDBLite consensus disorder prediction 323 359 - -
Gma13g02202 375 SMART sant 13 63 IPR001005 -
Gma13g02202 375 SMART sant 66 114 IPR001005 -
Gma13g02202 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma13g02202 375 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma13g02202 375 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma13g02202 375 PANTHER PROTEIN ODORANT1-LIKE 304 370 - -
Gma13g02202 375 PANTHER PROTEIN ODORANT1-LIKE 1 272 - -
Gma13g02202 375 MobiDBLite consensus disorder prediction 323 348 - -
Gma13g02202 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma13g02202 375 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma13g02202 375 Gene3D - 69 116 - -
Gma13g02202 375 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02202 Gma-Chr13 36986511 36988317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02202 1 375 MYB Transcription Factor Family AT4G21440 54.005 8.62e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g02202 Myb_DNA-binding 6.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00630 15 5164453 5166184 Gma13g02202 13 36986511 36988317 GST
Gma07g01836 07 39557957 39559711 Gma13g02202 13 36986511 36988317 PCT
Gma08g00571 08 4707895 4709631 Gma13g02202 13 36986511 36988317 PCT
Gma13g02202 13 36986511 36988317 Gma07g01836 07 39557957 39559711 PCT
Gma13g02202 13 36986511 36988317 Gma08g00571 08 4707895 4709631 PCT