LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g02197	ATGGGTGACGAACAACCGTCGACCACCGCCGTCTCCGGTCTCCGTCGAGTCATCACGCTCATCTCTTCCTTGATCTCCCTCTCCCTCTCGATCAGAGTCTTCGCCGGAAAGTGGCAACTTATCCGGAGCAGGCTGGAGGAACTCCACTCGGCCCTCGTCGCCGGAGATGCCACGTCACTCTCCGGCGAGCTCCCGGCGATAACGGGCACGGCGGAGGAGTGCCACGAGCTGGCGCGGCGGTGCTTGGATCTGTCCTACAGCGGAAAGCTTCTTATGCAGAGCGACTTGGACGTGACATTGGGAAAGTTGGAAGCTCACGTCAAGAAGCTATCTGAGATATTCAAGAAGAATGTGTCGATGCATGGCTATGCCGTTGTGGTTTCAAGGCCTGGCTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGACTTATTGACTCGAATGAAGGTTGGTGATTTGGGTATGAAGAAGCAGGCTTTGGTGAACTTGCATGAGGTGGTTGTGGAGGATGAAAAGTATGTGAAGTTGGTTGCTGAGGTTTCTGAGTTTGTTCACGTGTTGGTGGATTTTCTAGGTTGCAATGAGGTTGAGGTTGTGGAGGAGGCTGCCAAGGTTGTTTCTTTGGTTGCCGGGTTTGATTCTCATAAAGGGGTTTTGGTCAGTGCTGGGGTTATTGCCCCTTTGATTCGGGTTTTGGAATGTGGGAGTGAGGTAGGGAAGGTTGGTGCTGCGAGGTGTTTGCAAAGGTTGACCGAGAATTCGGATAATGCGTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCTTTGTTGAGGATTTGTGAGAGTGTGGAGTGTAAAGGGGAATTGGTTGGTCCTGCTTGTGGGGTGTTGAGGAATCTCTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACTTTTGTGAGGCTTGTGAGGTCTAAGGATGAAACAGTTCAGGTGAGTTCTATTGAGTTGATTAAGAACATTGCCTCTGATGATGATTTGGTTAGGCAGATGGTGGTTAAAGAAGGAGGGGTTCGTGTTCTTTTGCGTGTTTTGGATCCTAAGTGGACTTGTTCGTCCAAAATAAGAGAGGTTGTGATGAGGGCTATTGAGAATTTGTGTTTTTCTTCGCCTAGTTGTGTTAGTGTTTTGCTGAGTTATGGTTTTGTGGATCAATTGATGTATTATGTGAGAAATGGGGAGGCTTTGGTTCAGGAGTTGGCGCTGAAGGTGGCGTTTAGATTCTGCGAAACATCGGAGGAGGCTAAGAAGGCGTTGGGCGATGCCGGCTTCATGGCTGAGCTTGTGAAGTTTCTGAATGCCAAATCATTTGAAGTTAGAGAAATGGCAGCAGAGGCACTCTCTGGAATGGTTATGGTGGCAAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTGCTCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGCAATTCAGAGGCTTGTGAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAATGGAATCTGGCACTCTTGAATTTTTACTATTTCATTTGCCTTCATGACAAGAGTAGCTCAGCCTTTTTATTGAGATTGTAA	1617	0.4842	MGDEQPSTTAVSGLRRVITLISSLISLSLSIRVFAGKWQLIRSRLEELHSALVAGDATSLSGELPAITGTAEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKNVSMHGYAVVVSRPGFGACKDDMRFYLRDLLTRMKVGDLGMKKQALVNLHEVVVEDEKYVKLVAEVSEFVHVLVDFLGCNEVEVVEEAAKVVSLVAGFDSHKGVLVSAGVIAPLIRVLECGSEVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESVECKGELVGPACGVLRNLCGVEEIKRFMVEEGVVSTFVRLVRSKDETVQVSSIELIKNIASDDDLVRQMVVKEGGVRVLLRVLDPKWTCSSKIREVVMRAIENLCFSSPSCVSVLLSYGFVDQLMYYVRNGEALVQELALKVAFRFCETSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGEGNSEACEEAIHKPVPQYVEWNLALLNFYYFICLHDKSSSAFLLRL	538

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma13g02197	538	Gene3D	-	143	505	IPR011989	-
Gma13g02197	538	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	5	497	-	-
Gma13g02197	538	SMART	arm_5	427	467	IPR000225	GO:0005515
Gma13g02197	538	SMART	arm_5	298	338	IPR000225	GO:0005515
Gma13g02197	538	SMART	arm_5	339	383	IPR000225	GO:0005515
Gma13g02197	538	SMART	arm_5	172	213	IPR000225	GO:0005515
Gma13g02197	538	SMART	arm_5	214	254	IPR000225	GO:0005515
Gma13g02197	538	SMART	arm_5	255	297	IPR000225	GO:0005515
Gma13g02197	538	SUPERFAMILY	ARM repeat	144	495	IPR016024	-
Gma13g02197	538	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	266	310	IPR000225	GO:0005515

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g02197	Gma-Chr13	36962148	36963995	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma13g02197	126	416	U-box Gene Family	AT2G23140	23.549	4.61e-09	57.0

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma13g02197	-		-	gmx:100783537	927.161

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma15g00634	15	5192366	5194057	Gma13g02197	13	36962148	36963995	GST
Gma07g01839	07	39613845	39615982	Gma13g02197	13	36962148	36963995	PCT
Gma08g00568	08	4656167	4658049	Gma13g02197	13	36962148	36963995	PCT
Gma13g02197	13	36962148	36963995	Gma07g01839	07	39613845	39615982	PCT
Gma13g02197	13	36962148	36963995	Gma08g00568	08	4656167	4658049	PCT

Showing 1 to 5 of 5 entries

Previous1Next