Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02197 ATGGGTGACGAACAACCGTCGACCACCGCCGTCTCCGGTCTCCGTCGAGTCATCACGCTCATCTCTTCCTTGATCTCCCTCTCCCTCTCGATCAGAGTCTTCGCCGGAAAGTGGCAACTTATCCGGAGCAGGCTGGAGGAACTCCACTCGGCCCTCGTCGCCGGAGATGCCACGTCACTCTCCGGCGAGCTCCCGGCGATAACGGGCACGGCGGAGGAGTGCCACGAGCTGGCGCGGCGGTGCTTGGATCTGTCCTACAGCGGAAAGCTTCTTATGCAGAGCGACTTGGACGTGACATTGGGAAAGTTGGAAGCTCACGTCAAGAAGCTATCTGAGATATTCAAGAAGAATGTGTCGATGCATGGCTATGCCGTTGTGGTTTCAAGGCCTGGCTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGACTTATTGACTCGAATGAAGGTTGGTGATTTGGGTATGAAGAAGCAGGCTTTGGTGAACTTGCATGAGGTGGTTGTGGAGGATGAAAAGTATGTGAAGTTGGTTGCTGAGGTTTCTGAGTTTGTTCACGTGTTGGTGGATTTTCTAGGTTGCAATGAGGTTGAGGTTGTGGAGGAGGCTGCCAAGGTTGTTTCTTTGGTTGCCGGGTTTGATTCTCATAAAGGGGTTTTGGTCAGTGCTGGGGTTATTGCCCCTTTGATTCGGGTTTTGGAATGTGGGAGTGAGGTAGGGAAGGTTGGTGCTGCGAGGTGTTTGCAAAGGTTGACCGAGAATTCGGATAATGCGTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCTTTGTTGAGGATTTGTGAGAGTGTGGAGTGTAAAGGGGAATTGGTTGGTCCTGCTTGTGGGGTGTTGAGGAATCTCTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACTTTTGTGAGGCTTGTGAGGTCTAAGGATGAAACAGTTCAGGTGAGTTCTATTGAGTTGATTAAGAACATTGCCTCTGATGATGATTTGGTTAGGCAGATGGTGGTTAAAGAAGGAGGGGTTCGTGTTCTTTTGCGTGTTTTGGATCCTAAGTGGACTTGTTCGTCCAAAATAAGAGAGGTTGTGATGAGGGCTATTGAGAATTTGTGTTTTTCTTCGCCTAGTTGTGTTAGTGTTTTGCTGAGTTATGGTTTTGTGGATCAATTGATGTATTATGTGAGAAATGGGGAGGCTTTGGTTCAGGAGTTGGCGCTGAAGGTGGCGTTTAGATTCTGCGAAACATCGGAGGAGGCTAAGAAGGCGTTGGGCGATGCCGGCTTCATGGCTGAGCTTGTGAAGTTTCTGAATGCCAAATCATTTGAAGTTAGAGAAATGGCAGCAGAGGCACTCTCTGGAATGGTTATGGTGGCAAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTGCTCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGCAATTCAGAGGCTTGTGAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAATGGAATCTGGCACTCTTGAATTTTTACTATTTCATTTGCCTTCATGACAAGAGTAGCTCAGCCTTTTTATTGAGATTGTAA 1617 0.4842 MGDEQPSTTAVSGLRRVITLISSLISLSLSIRVFAGKWQLIRSRLEELHSALVAGDATSLSGELPAITGTAEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKNVSMHGYAVVVSRPGFGACKDDMRFYLRDLLTRMKVGDLGMKKQALVNLHEVVVEDEKYVKLVAEVSEFVHVLVDFLGCNEVEVVEEAAKVVSLVAGFDSHKGVLVSAGVIAPLIRVLECGSEVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESVECKGELVGPACGVLRNLCGVEEIKRFMVEEGVVSTFVRLVRSKDETVQVSSIELIKNIASDDDLVRQMVVKEGGVRVLLRVLDPKWTCSSKIREVVMRAIENLCFSSPSCVSVLLSYGFVDQLMYYVRNGEALVQELALKVAFRFCETSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGEGNSEACEEAIHKPVPQYVEWNLALLNFYYFICLHDKSSSAFLLRL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02197 538 Gene3D - 143 505 IPR011989 -
Gma13g02197 538 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 497 - -
Gma13g02197 538 SMART arm_5 427 467 IPR000225 GO:0005515
Gma13g02197 538 SMART arm_5 298 338 IPR000225 GO:0005515
Gma13g02197 538 SMART arm_5 339 383 IPR000225 GO:0005515
Gma13g02197 538 SMART arm_5 172 213 IPR000225 GO:0005515
Gma13g02197 538 SMART arm_5 214 254 IPR000225 GO:0005515
Gma13g02197 538 SMART arm_5 255 297 IPR000225 GO:0005515
Gma13g02197 538 SUPERFAMILY ARM repeat 144 495 IPR016024 -
Gma13g02197 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 310 IPR000225 GO:0005515
Gma13g02197 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 352 IPR000225 GO:0005515
Gma13g02197 538 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02197 Gma-Chr13 36962148 36963995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02197 126 416 U-box Gene Family AT2G23140 23.549 4.61e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02197 - - gmx:100783537 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00634 15 5192366 5194057 Gma13g02197 13 36962148 36963995 GST
Gma07g01839 07 39613845 39615982 Gma13g02197 13 36962148 36963995 PCT
Gma08g00568 08 4656167 4658049 Gma13g02197 13 36962148 36963995 PCT
Gma13g02197 13 36962148 36963995 Gma07g01839 07 39613845 39615982 PCT
Gma13g02197 13 36962148 36963995 Gma08g00568 08 4656167 4658049 PCT