Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02196 ATGTCGAGTATCACTTTCTTCCACCGTCTCTCTAGTGCTTTCCGTGACAACCAGTCGCATCTTAAGCTTGTACTGCTCTGCACCGCCGTAAGTGGTGGTGGCCTTTGGGCTTATGGTGAGAGTGTTGCACCTGAAGAGGCAGTTACGGAGAAGAAGAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGCCACAAGTTTTATGAAGAATTTGAACAATCCAAAATATGAGATTCAAGTAGTTTCGCCTCGTAATTACTTTGCATTCACCCCTTTGCTGCCTAGCGTTACGTGCGGGACAGTCGAAGCGCGCAGCATTGTTGAACCAGTTCGCAATATTTTTAAGCAGAAAAAGGTGGACGTACAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCAGAAAATAGGAAAGTTTACTGTCGATCTAGTGTGAACAATAATTTGGATGGGAAAGAAGAATTTGTTGTGGATTATGACTACCTAATAGTGGCGGTGGGCGCTAATGTCAATACGTTTAATACTCCAGGAGTGACGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTTGAAAGAGCAAATTTGCCTGATGTTAGTGAAGATGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCTACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGGTCCGTTTATATCCTGGAATTAAAGATTTAGTTAAAATTACACTTTTGGAGGCGGGCAATCATATCTTGGGCATGTTTGACAAGAGAATCACTGCTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCTGAGAAAGAAATTTCCACTAAAGAACTGAAAAATGGAGAGATTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGGCACAAATTGGTCAGGCTAGCAGGCGTGCCCTAGCTACAGACGAATGGTTGAGAGTTGAGGGGTGCAACAATGTCTACGCGCTCGGTGACTGTGCCACAATAAACCAGCGAAAAGTCATGGAAGATATTGTGGCGATCTTTAAGAAGGCTGACAAAGACAATTCTGGAACACTTACGGTCATACAATTTCAAGAGGTCATGAAAGATATCTGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGGGCAACATTGCTGATTTATTGAAGGAAGCCAAGGGAGATGATAAAAAAGAATCAATTGAGCTGAATATTGAAGAACTCAAAACTGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAAGTGTTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCACCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGTAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATCTGA 1731 0.4269 MSSITFFHRLSSAFRDNQSHLKLVLLCTAVSGGGLWAYGESVAPEEAVTEKKKVVVLGTGWAATSFMKNLNNPKYEIQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFKQKKVDVQFSEAECFKIDAENRKVYCRSSVNNNLDGKEEFVVDYDYLIVAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAGNHILGMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKNGEIKTIPYGMAVWSTGIGTRPFIKDFMAQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIVAIFKKADKDNSGTLTVIQFQEVMKDICERYPQVELYLKNKQMGNIADLLKEAKGDDKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFRGEGHHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSSI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02196 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Gma13g02196 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Gma13g02196 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Gma13g02196 576 PANTHER NADH DEHYDROGENASE 3 576 IPR045024 GO:0003954|GO:0006116
Gma13g02196 576 PANTHER NAD(P)H DEHYDROGENASE B2 3 576 - -
Gma13g02196 576 SUPERFAMILY EF-hand 367 463 IPR011992 -
Gma13g02196 576 Coils Coil 438 458 - -
Gma13g02196 576 Gene3D - 42 420 - -
Gma13g02196 576 Gene3D - 421 575 - -
Gma13g02196 576 SUPERFAMILY FAD/NAD(P)-binding domain 218 371 IPR036188 -
Gma13g02196 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 379 IPR023753 GO:0016491
Gma13g02196 576 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Gma13g02196 576 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02196 Gma-Chr13 36948509 36953862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02196 1 576 Chloroplast and Mitochondria Gene Families AT4G21490 73.024 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02196 K03885 - gmx:100797657 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00635 15 5203986 5208629 Gma13g02196 13 36948509 36953862 GST
Gma07g01841 07 39646080 39651534 Gma13g02196 13 36948509 36953862 PCT
Gma08g00566 08 4620485 4626845 Gma13g02196 13 36948509 36953862 PCT
Gma13g02196 13 36948509 36953862 Gma07g01841 07 39646080 39651534 PCT
Gma13g02196 13 36948509 36953862 Gma08g00566 08 4620485 4626845 PCT