Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02190 ATGGCTTCGGCTTCGTCTTCGTCCTCCAAGCTATGCTTCAATTCTGACTGCAAAGAATTGAAGTCCGAAAGACCTAAGAAAGGGTGGAGACTCCGCAGCGGAGAACTAGCAGAGCTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGAAGGTTCTGTGAGATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCTAAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGATCCTGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAGTATTATTTTGCCATCTAACCTGCCATGGCCACAGTCCTTTTCCCTTCAAAATCGTTTATCTGATCGACTTAGAGACCTATCTGCCAAAGGTTGGAGTCAGCTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCTGCTTCTTCATCTGACCTGATCCCAGAAGTGCCTTCTTTAGTTGAGTTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAATGAGGACTTGTCTGGAATACCAGTTAATTGGAACGTCAAGCTTGGCTCACGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGACAAATCAAGTTCATGTTTAAATATGTGTCAACAGCCTTCTTCTCTGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGGCTGTGCCTAATTCATGCCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGATTCATCAGGTGAGGCTCAGATTCGCAATGGGCGGCCTCGAGCAGATTCCCGAGGAAGAAACCAGTTATTGCCACGGTACTGGCCAAGGTGTACAGATCTGGAGCTACAGCAAATTTCTATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCTCTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGTCATGCCATCTGATCAGGACAATGAGACCAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCAGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATCTCTAGAAAAAGAAAGAGCAACATATTGAGCTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGACCCCCTCCTAGCCACATTCCAAGTATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAGTGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATTTTCTTGTTCAGCTGCGCAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAGAAAATGAAGGCCACCAAACAGGATCCCGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCATCCGCCCAGGCCACAACTAAGCATCCACGCCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGATTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATCCTCTACCATTACCTTCATCTGAAATTTTGCTTGATGAAGATTCCTTGCCCTGTAGTAACACAGGTGATAGTAGCCCAAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAGCCGAATAAAATCATCTGCTTCGCCGTTCAAAGGCAAAATTGACCTCAATATCCAACCAGAGCGAGAAGAAGAATTATCACCTGGTTCGGATTCTGGCGGCATGATGAAGTTGCTCCATGATGCTACTGAGCGATATCTCAAACAGCAGACTGTGAACTCTGGTACTGGAGATTCATCAGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTGCCCATGGCAGTAGTAGTCATAATACTGATAAGGAACATGCCCAATCTTTGCCTATGAATGTGTGA 2640 0.4432 MASASSSSSKLCFNSDCKELKSERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCLKRIHCGCIVSSHAFMLLDPGGIECYACARKSIILPSNLPWPQSFSLQNRLSDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSASSSDLIPEVPSLVELSNSFDKMYCNERLPASALEKKNEDLSGIPVNWNVKLGSREMMLMNGMRNEDKSSSCLNMCQQPSSLKEESSPQPFGLAVPNSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSGEAQIRNGRPRADSRGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSVMPSDQDNETKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILSSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCFKWRKLPASALLPSKWTCSDNSWDPERFSCSAAQELTAEQLENLLPPCNSAVPKKMKATKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPLPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPSRIKSSASPFKGKIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSSGSQSQLVGDAMREDKLSNGVAHGSSSHNTDKEHAQSLPMNV 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02190 879 CDD B3_DNA 334 435 IPR003340 GO:0003677
Gma13g02190 879 MobiDBLite consensus disorder prediction 751 769 - -
Gma13g02190 879 Gene3D - 314 439 IPR015300 -
Gma13g02190 879 Coils Coil 717 737 - -
Gma13g02190 879 MobiDBLite consensus disorder prediction 439 453 - -
Gma13g02190 879 MobiDBLite consensus disorder prediction 824 845 - -
Gma13g02190 879 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Gma13g02190 879 MobiDBLite consensus disorder prediction 857 879 - -
Gma13g02190 879 Gene3D - 567 620 - -
Gma13g02190 879 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Gma13g02190 879 SMART B3_2 336 437 IPR003340 GO:0003677
Gma13g02190 879 MobiDBLite consensus disorder prediction 436 459 - -
Gma13g02190 879 MobiDBLite consensus disorder prediction 222 265 - -
Gma13g02190 879 MobiDBLite consensus disorder prediction 222 282 - -
Gma13g02190 879 MobiDBLite consensus disorder prediction 718 733 - -
Gma13g02190 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 450 - -
Gma13g02190 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 450 811 - -
Gma13g02190 879 Pfam CW-type Zinc Finger 568 610 IPR011124 GO:0008270
Gma13g02190 879 MobiDBLite consensus disorder prediction 718 879 - -
Gma13g02190 879 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Gma13g02190 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 450 811 - -
Gma13g02190 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 450 - -
Gma13g02190 879 ProSiteProfiles Zinc finger CW-type profile. 563 613 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02190 Gma-Chr13 36896360 36906618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02190 9 740 B3 DNA Binding Superfamily AT2G30470 42.071 2.21e-164 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma13g02190 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02190 - - gmx:100782114 1752.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00641 15 5255486 5265679 Gma13g02190 13 36896360 36906618 GST