Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02176 ATGAGAACGGAGGTGATGGGGAGGTGGGGCACCTGGGAAGAGCTCCTCCTTGGTGGCGCCGTTCTCCGCTACGGAGCCCGGAATTGGAAAGTCGTCGCCGCCGAGCTCCGGGCACGAACAGTTTGTCCCTACATCATTACACCTGAGGTCTGTAAAGCCAAATATGAAGACTTGCAAAAGCGGTACTCTGGGAACAAGGCTTGGTTTGAGGAACTTAGGAAGACTAGAGTAGCAGAGCTGAAAAGAGCTCTGGAGGTGTCTGAAGATTCTATTGGGTCTCTTGAATCTAAACTTGAAAGCCTTAAGGCTGGAAAGAATGAGAAAAAAGATGATCGTCATGTTGACAAAGGATTGGCTCGTCCAAAGTTACATGTAGCCTCACAGAAATTGGAAAGAGTTGAATCTTCCACCAAAGAGACATCAAAAGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCGGTTCCAGCACGGTCTGTGGAAGATATGGAGACTAAGCCTGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATAAGCGGGCACATACTATATACGAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGATTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGACATTGTGTCATGGTGTAAAGAAAGTTCGACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATATTTGAAACTAAAGGTGCTCCGGCTTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAACATATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCGAGTGTAGAACTTTTCAGGGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAAACTGTTCTACTGCTAAGAGGCATTGTGACCAAAAAAATGAAGGAAACTTTGAAGGGTACTACGAGCAACAAAGTCACCACTCAAGCTACCAATGTTCCTATTAAACTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAGTAAAGTTGAATCTCCATCCTCAGTGGAATCCTTAACTGTGAAGAAAAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAGAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACAAAGTGA 1428 0.4482 MRTEVMGRWGTWEELLLGGAVLRYGARNWKVVAAELRARTVCPYIITPEVCKAKYEDLQKRYSGNKAWFEELRKTRVAELKRALEVSEDSIGSLESKLESLKAGKNEKKDDRHVDKGLARPKLHVASQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECPVPARSVEDMETKPEVSHSTEQAKVLNVDKRAHTIYEGQGGSLKKRRGKRKRKDCGRNMKEASVGESDLLDSADIVSWCKESSTSNCGEVAKSCGVDDQNRNLKKDRVEDMMEILDFIFETKGAPAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKTVLLLRGIVTKKMKETLKGTTSNKVTTQATNVPIKLPVHNPHVKPRSVRPGNRKIVAKAVGGNNSASGVSHGTKKPSKVESPSSVESLTVKKKGFGRPKKVGRGAAGQRPAMPMKGKKRVRTK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02176 475 Coils Coil 469 475 - -
Gma13g02176 475 MobiDBLite consensus disorder prediction 202 221 - -
Gma13g02176 475 MobiDBLite consensus disorder prediction 102 139 - -
Gma13g02176 475 Gene3D - 259 376 IPR036427 GO:0005515
Gma13g02176 475 MobiDBLite consensus disorder prediction 102 164 - -
Gma13g02176 475 MobiDBLite consensus disorder prediction 412 475 - -
Gma13g02176 475 MobiDBLite consensus disorder prediction 415 440 - -
Gma13g02176 475 PANTHER BROMODOMAIN PROTEIN 1 475 - -
Gma13g02176 475 Coils Coil 77 111 - -
Gma13g02176 475 SUPERFAMILY Bromodomain 264 370 IPR036427 GO:0005515
Gma13g02176 475 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 475 - -
Gma13g02176 475 SMART bromo_6 266 370 IPR001487 GO:0005515
Gma13g02176 475 CDD Bromodomain 271 365 - -
Gma13g02176 475 Pfam Bromodomain 274 354 IPR001487 GO:0005515
Gma13g02176 475 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
Gma13g02176 475 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02176 Gma-Chr13 36786956 36792842 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma13g02176 Bromodomain 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02176 - - gmx:100793951 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00653 15 5356998 5362978 Gma13g02176 13 36786956 36792842 GST
Gma07g01858 07 39811343 39816011 Gma13g02176 13 36786956 36792842 PCT
Gma13g02176 13 36786956 36792842 Gma07g01858 07 39811343 39816011 PCT