Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02167 ATGATGGCAAACGAGGTTTTTGATTACCCGTATCTCTTGGGCGACGACGGAGACGTCGCCAACGACGATAAGCTCTGCATCGATTTGGACACTGTTATGAGCGTTCTCGACGAGGACACCAATCCTTCCGAGAGTAGTCCTGAGGATTTTTCATTGAAAAATAATTCTCCTGGTGAAGCTGGCCTCCATGATAATTTTCTACTTCAAAATGGGAATTATGTCCTTGAATGTAAACATGAAAACCAGGGGCCTTCATCACAGATTTTTTCTTCCCCAAATGCTCTTGCTGGTGGTTTCAGGGACTCCTCCATGGTTGAAAGTGATGAAAATTGCTTCACAGAAATGACAGAAGTTTCTAATTGTGAGTTGCCTGCTTACATTGCAGACAGAAGGTTCCCTGTTCCTGAGGCGATTTCAAGCTGTGCAGCTGTCTGTGGAGATAATTTGAACCTGACTCCGTGGAAGCGTGAAAATGACAGCCAAATCAAGCATATAGGATATGATGCACAATCTGAATATGCTTCACATGGCTCTATCATTGAGAATATTGATTTAAATTTTGGAGATTATGAAACATATATGGAAGACATTATTGGATTTTCTGGTAAACAAGAAAATGACTCATGTACATCTTTTGAAATGTCGTATGTGGATGCTGCTGATAGATCTTCACATGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTGTTACCAAGGTATGGATGATAGACCTGTTGTTGCCAACAGTTCTGGTCGTTTGTCTAATGGTGTTTATCCTCACGTGCGGAAAAATGAAGAAATGATGAAGAACATGAAGGTTGCTAAAATGGAGTTATTTGCTGATACAAGTAGTGGCATGCATTCCGGCATTAATGGTGGGATATCTTTTCAAGATAGTCGATTTAGGTTTGCAGATAGTAAATATGCATCATCTTTTCCCGGTAATGTTCTCTTTGAAGACAATGCGTCAGTGCAACTTTCAAATTGTTGTTCATATATTTCGAGTGAAGTTCAATCACTTAATGTCAAAGCCGAAAGAGACGAACGGGTTATGCCTTACCAAAACTCTGTTCACAGTGATGATGCTGAGTTCAGTGTAGGTCAAGAGATGAAACAACTATCTGGTATTTTCCCTGCTGTTGGATGTCAGGGTAATGATTTCTTTAACTGCGAGGATGGGGTTACAATTGCAACAACTCAGAAAGCCAAATATTATCAAGATGGTGTCGATGGAGCTGCCAATAACTTTCCAGGAAACATGGGAAATTTGAATTTAAAACCATTAGACAAATCTTTGTATAATGCCCAGACATCTATTGCCAGTGGGAAGCAGTATAATTGTGTTATGAGTGAAGGAGAGGGCAAAGTAATCGAACATAGAAGTATTGATTCTCATCTTTCAAAAGGAAGTATTGAGACATCTAATACTGAAGACATCAATCACCCTGCACTTATAAGTCGATCAGCAGAGCTTGGGAATTCCCTTATTACATCAGAATCTTCTAGAGGGGGTTATACTCATTCTTATATGGCGGGAAGTGTGAGGCCCAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAACCAAAGTCAGAGATTAGTCCACCAGATGGTCTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTCTATCATGGATGGTTCAGAAGGAAACGTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACCATAGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAGTGCAGCAATGCCCAAAAATTTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAATGGAATAGTAAAGAACGAATCTAATATGTGTCAGGATTTGTCTAGTAGAAATCCAAACCAGAACATGAATTTGTTAGTGCCTGCGAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACAAGTGTCCTGCGGCAATGGGCCGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAAACTCTCTGTGCTAGTATATCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAATATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTTGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAATATCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAAAAGTGGAAAGAAGCGATTGGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCGGGGACTCCTATCCAGAATGCAATTGACGATCTCTATAGTTACTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACTTCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAGTCCATCAAAAGGATACAGAAAGCTACAAGCTGTCTTAAAAACAATAATGTTACGTCGGACAAAAGGCTCACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGAGATTTTTATTCCAAACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCGTGCGATCATCCTCTGCTTGTCAAACGTTACAATTCTAACTCTCTCTGGAAATCCTCAGTTGAGATGGCAAAGAATCTTCCTCAGGAAAAACGATTATCTCTTTTAAAATGTTTGGAGGCATCCTTGGCCCTCTGTGGTATCTGTAATGACCCTCCTGAATATGCTGTTGTTTCAGTTTGTGGACATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAACTGCACAACCCGACTAAGCATGTCTTCAGTGTTTTCCAAAGTCACACTGAATAGTTCTTTTTCTGAACAGGCTGGTGATAATTTGCCTGATTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTTTTCTCAGGCTCAGCCATGCAATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTTGTTGTCTAAACCACAATGCTGTGCTTCCCAAAACAATTCTGTGCAGAGCACTTCTGGGGAAAGTACTGATGGCCTTGGTAGTTCATCTAGTGCTGACAGAATGAAATCCTTAAATGAAATTCCCGAGAGTCAAAATGTGTTTGAGGAGAGAAGCTCTAATAATTCAGTCGGTGTAGGAGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTGGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTCAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTAAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACCGAGCCCATCGAATTGGACAAACTCGTCCTGTCACAGTTTTACGGTTAACCGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAACAATGGTTGCATCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3960 0.4088 MMANEVFDYPYLLGDDGDVANDDKLCIDLDTVMSVLDEDTNPSESSPEDFSLKNNSPGEAGLHDNFLLQNGNYVLECKHENQGPSSQIFSSPNALAGGFRDSSMVESDENCFTEMTEVSNCELPAYIADRRFPVPEAISSCAAVCGDNLNLTPWKRENDSQIKHIGYDAQSEYASHGSIIENIDLNFGDYETYMEDIIGFSGKQENDSCTSFEMSYVDAADRSSHVATSTDSSICQGSNVPNDFSDYYPSLNCYQGMDDRPVVANSSGRLSNGVYPHVRKNEEMMKNMKVAKMELFADTSSGMHSGINGGISFQDSRFRFADSKYASSFPGNVLFEDNASVQLSNCCSYISSEVQSLNVKAERDERVMPYQNSVHSDDAEFSVGQEMKQLSGIFPAVGCQGNDFFNCEDGVTIATTQKAKYYQDGVDGAANNFPGNMGNLNLKPLDKSLYNAQTSIASGKQYNCVMSEGEGKVIEHRSIDSHLSKGSIETSNTEDINHPALISRSAELGNSLITSESSRGGYTHSYMAGSVRPKARDEQYILRVALQDLSQPKSEISPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCSNAQKFELETLNLDADDDQLPENGIVKNESNMCQDLSSRNPNQNMNLLVPAKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKAKLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAISSKKRKCPPSSKSGKKRLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKNLPQEKRLSLLKCLEASLALCGICNDPPEYAVVSVCGHVFCNQCICEHLTGDDNQCPATNCTTRLSMSSVFSKVTLNSSFSEQAGDNLPDYSGCEVEESEFFSQAQPCNSSKIKAALEVLQLLSKPQCCASQNNSVQSTSGESTDGLGSSSSADRMKSLNEIPESQNVFEERSSNNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRTMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02167 1319 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 490 1318 - -
Gma13g02167 1319 MobiDBLite consensus disorder prediction 37 56 - -
Gma13g02167 1319 Gene3D - 1058 1318 IPR027417 -
Gma13g02167 1319 MobiDBLite consensus disorder prediction 743 776 - -
Gma13g02167 1319 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 490 1318 - -
Gma13g02167 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 997 1055 IPR013083 -
Gma13g02167 1319 Gene3D - 777 889 IPR038718 -
Gma13g02167 1319 Gene3D - 661 753 IPR038718 -
Gma13g02167 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 888 IPR027417 -
Gma13g02167 1319 SMART helicmild6 1178 1261 IPR001650 -
Gma13g02167 1319 Pfam Zinc finger, C3HC4 type (RING finger) 1004 1040 IPR018957 GO:0046872
Gma13g02167 1319 Gene3D - 538 628 IPR038718 -
Gma13g02167 1319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1144 1314 IPR001650 -
Gma13g02167 1319 CDD SF2_C_SNF 1164 1271 - -
Gma13g02167 1319 MobiDBLite consensus disorder prediction 743 764 - -
Gma13g02167 1319 Pfam SNF2-related domain 587 965 IPR000330 GO:0005524|GO:0140658
Gma13g02167 1319 SMART ultradead3 563 865 IPR014001 -
Gma13g02167 1319 ProSitePatterns Zinc finger RING-type signature. 1019 1028 IPR017907 -
Gma13g02167 1319 MobiDBLite consensus disorder prediction 1115 1137 - -
Gma13g02167 1319 SMART ring_2 1004 1042 IPR001841 -
Gma13g02167 1319 ProSiteProfiles Zinc finger RING-type profile. 1004 1043 IPR001841 -
Gma13g02167 1319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 850 IPR014001 -
Gma13g02167 1319 CDD DEXDc_SHPRH-like 567 888 - -
Gma13g02167 1319 MobiDBLite consensus disorder prediction 37 53 - -
Gma13g02167 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1318 IPR027417 -
Gma13g02167 1319 SUPERFAMILY RING/U-box 1001 1048 - -
Gma13g02167 1319 Pfam Helicase conserved C-terminal domain 1162 1261 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02167 Gma-Chr13 36714346 36723801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02167 347 1318 RAD5 or RAD16-like Gene Family AT1G61140 54.921 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma13g02167 SNF2_N 6.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02167 - - gmx:100792901 2412.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00662 15 5433604 5442348 Gma13g02167 13 36714346 36723801 GST
Gma07g01863 07 39896708 39905480 Gma13g02167 13 36714346 36723801 PCT
Gma13g02167 13 36714346 36723801 Gma07g01863 07 39896708 39905480 PCT