Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02164 ATGTATAGCATGGATTCATCATCTTCTGGATCTCAGTTTTCTCAGCACCCACAACTCCCTCCAGGGTTTCGATTCCACCCCACAGATGAAGAGCTAGTGGTTCAGTACCTCAAGAAAAAAGCAGACTCTGTTCCTCTTCCTGTTTCCATCATCGCCGAGGTTGATCTCTACAAGTTTGACCCATGGGAACTCCCAAGTAAAGCAACTTTTGGTGATCAAGAATGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGACAAGGCCTAACAGAGCTGCTACTTCTGGGTATTGGAAAGCAACCGGAACTGACAAGCCCATACTTGCATCTCATGGTCACCACAACAAAGTTGGAGTCAAGAAATCACTTGTTTTCTATGGTGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGCTGATAGCTCCTCAAACTCTAGCTCAAAACCTCCTTCTTCGGCTTCAGATCATGCACACAGTGGCAAGAAAAACTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTACCCACCTGCCAAGGTTACCTTTGATGGAGCAGAATAAGGAGATTTCTAGGGAGATTTCTATGCTACCAATGATGTCAACTTTGTCAATGGCTAATGATAACAACACTCCTCAGGATTCCAAAACTGCGTCTTCTAGAAGCACAAGTTATGGACCCCTTGGAGTAGAAAATGATGATAATTTCTTTGATGGAATCTTTGGAGTTGATCATCAGAGCATGCAGCAAGATGTTTCTGATCATTCCCAACAAGTGTCTTCAAAGGGAAACTTCCCTATGAAAAGGGAACTTTCGTCACAGTTTTGGAATGGCACAGGGTCATCCTCTTCAAGCAGGCAATTCCATTACGATCTTAATTATGCTGGAAACAGCACTACTGTTGAGGAAGACAATTCCTTCGTTTCTCTGCTTAGCCACCTTCCACAGAACACAACAACGTTTCACCCAAATGCGCTTCTTGGCCCTGTTGGTAATGGTGTATTGAGGCAACAGTTTCAACTTCCAAGCATGAATTGGAATACTTAG 1092 0.4359 MYSMDSSSSGSQFSQHPQLPPGFRFHPTDEELVVQYLKKKADSVPLPVSIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDKPILASHGHHNKVGVKKSLVFYGGKPPKGVKTNWIMHEYRLADSSSNSSSKPPSSASDHAHSGKKNSLRLDDWVLCRIYKKSNSTHLPRLPLMEQNKEISREISMLPMMSTLSMANDNNTPQDSKTASSRSTSYGPLGVENDDNFFDGIFGVDHQSMQQDVSDHSQQVSSKGNFPMKRELSSQFWNGTGSSSSSRQFHYDLNYAGNSTTVEEDNSFVSLLSHLPQNTTTFHPNALLGPVGNGVLRQQFQLPSMNWNT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02164 363 Gene3D NAC domain 28 192 IPR036093 GO:0003677|GO:0006355
Gma13g02164 363 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 334 - -
Gma13g02164 363 MobiDBLite consensus disorder prediction 149 167 - -
Gma13g02164 363 MobiDBLite consensus disorder prediction 1 21 - -
Gma13g02164 363 ProSiteProfiles NAC domain profile. 19 187 IPR003441 GO:0003677|GO:0006355
Gma13g02164 363 SUPERFAMILY NAC domain 14 187 IPR036093 GO:0003677|GO:0006355
Gma13g02164 363 MobiDBLite consensus disorder prediction 149 170 - -
Gma13g02164 363 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Gma13g02164 363 PANTHER NAC TRANSCRIPTION FACTOR 56 3 334 - -
Gma13g02164 363 MobiDBLite consensus disorder prediction 1 18 - -
Gma13g02164 363 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02164 Gma-Chr13 36674367 36675805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02164 1 363 NAC Transcription Factor Family AT1G61110 52.861 1.29e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma13g02164 NAM 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02164 - - gmx:100792372 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00665 15 5466893 5468296 Gma13g02164 13 36674367 36675805 GST
Gma07g01866 07 39948616 39950391 Gma13g02164 13 36674367 36675805 PCT
Gma13g02164 13 36674367 36675805 Gma07g01866 07 39948616 39950391 PCT