Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02146 ATGACTTGTGGCTGCTTTGGAGCCAAATCTATAAAGGCAAAACGCCCTTCTTATGTTCCTGGTGAAATTGATGGCTATCCGCTAGATAATATAAGGCAATTTTCTGATAAAGAACTGAGATTAGCAACTGATAATTATAATCCAAAGAATAAGATAGGACGAGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAGAGATGGAAGGCGTATAGCAGTGAAGACTCTCTCAGTTTGGTCAAAGCAGGGAGTTCGCGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATTCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGTCGTACATTAGTCTACGAGCATGTGGAAAATGGAAGCCTTAATAGTGCCCTACTTGGCACAAGGAATAAAAACATGAAACTAGAATGGAGAAAAAGGTCTGCTATTTGTCTAGGTATTGCTAAGGGTCTTGCATTTCTTCATGAAGAACTTTCACCACCTATTGTACACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGATTTCAATCCCAAAATAGGTGATTTTGGGCTGGCTAAATTATTTCCAGATGACGTCACTCACATTAGCACAAGAATTGCTGGAACAACAGGTTACTTAGCACCGGAATATGCATTAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAGAAGCAGTGCCAGAAGGACAAACGGGGGAGGATCACACAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAAGAGAGGAAATTGTTGGAGTTTGTAGATCAAGACATGGAAGAATTTCCTGAGGAAGAGGTAATCAGGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAGCAGCAAATAGAAGGCCATTGATGATACAAGTTGTTGATATGCTATCCAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCGCCAGGATTCTTCACAAACGAAGGAGAATCCTCTAGAAATAACTCAAACCCTATCTCTTCTATTATTACTATTACTCAAGTGACCCCACGGAAATTGGGGAGCAGCGCTGCTTGA 1104 0.4031 MTCGCFGAKSIKAKRPSYVPGEIDGYPLDNIRQFSDKELRLATDNYNPKNKIGRGGFGTVYQGTLRDGRRIAVKTLSVWSKQGVREFLTEIKTLSNVKHSNLVELIGFCIQGPSRTLVYEHVENGSLNSALLGTRNKNMKLEWRKRSAICLGIAKGLAFLHEELSPPIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDVTHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLILEIISGRSSARRTNGGGSHKFLLEWAWQLYEERKLLEFVDQDMEEFPEEEVIRYMKVALFCTQSAANRRPLMIQVVDMLSKAIQLNEKELTAPGFFTNEGESSRNNSNPISSIITITQVTPRKLGSSAA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02146 367 PANTHER - 1 345 - -
Gma13g02146 367 Pfam Protein kinase domain 46 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02146 367 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Gma13g02146 367 Gene3D Phosphorylase Kinase; domain 1 22 121 - -
Gma13g02146 367 ProSiteProfiles Protein kinase domain profile. 46 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02146 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 345 - -
Gma13g02146 367 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Gma13g02146 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gma13g02146 367 SMART serkin_6 46 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02146 367 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Gma13g02146 367 CDD STKc_IRAK 52 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02146 Gma-Chr13 36540009 36543070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02146 34 336 Receptor kinase-like Gene Family AT1G56120 51.155 2.52e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma13g02146 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02146 - - gmx:100809588 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00681 15 5591182 5595098 Gma13g02146 13 36540009 36543070 GST
Gma07g01895 07 40197191 40201893 Gma13g02146 13 36540009 36543070 PCT
Gma13g02146 13 36540009 36543070 Gma07g01895 07 40197191 40201893 PCT