Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02130 ATGGCATTTCAGCACTACATTTCCCGGGATTTGAAAACCATCCCAAATGCTGTGACTGAGGCAGAAAACCCCAATGGTTGTTTTGATTGTAACATCTGCTTAGACTTTGCACATGAGCCAGTGGTGACACTTTGTGGTCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTTCCACCTGATGAGCATCCACAATGCCCCGTTTGCAAGGCTGATATATCCAACAGCACAATGGTTCCACTCTATGGCCGTGGCCATGCCGCTACCACAGCTGAAGGCAAAACAGCTTCTTGTGATGTTTTTATACCACCAAGACCATCTGCTTCATGTGCTCAAGCCCTTTTGGCAACATCTCAAAGGGGTCAGCACCTTCCATATCGTAATCCTTATCAGGGTCACTACTTCACCTCTCATCCATACCAAGAAGAGGATGATGCCACTTCACAAATGCTCAATCTTGGATCCCATCACCACCCTGTGACTGGGATGTTTGGGGAGATGGTTTATGCCAGGGTGTTTGGCAACCCAGAAAACTTGTATGCATACCCAAATTCTTATCAGCTGATGGGAAGTGCTACCCCTAGACTGAGAAGGCAAGAGATGCAGGCACATAAATCTTTGAACAGAATTTCTATTTTTCTCTTTTGCTGCTTCCTTCTTTGTCTTATTGTCTTCTAA 699 0.4578 MAFQHYISRDLKTIPNAVTEAENPNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLPPDEHPQCPVCKADISNSTMVPLYGRGHAATTAEGKTASCDVFIPPRPSASCAQALLATSQRGQHLPYRNPYQGHYFTSHPYQEEDDATSQMLNLGSHHHPVTGMFGEMVYARVFGNPENLYAYPNSYQLMGSATPRLRRQEMQAHKSLNRISIFLFCCFLLCLIVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02130 232 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Gma13g02130 232 SMART ring_2 30 76 IPR001841 -
Gma13g02130 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 128 IPR013083 -
Gma13g02130 232 SUPERFAMILY RING/U-box 24 89 - -
Gma13g02130 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gma13g02130 232 CDD RING-HC_AtRMA_like 28 78 - -
Gma13g02130 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Gma13g02130 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 232 - -
Gma13g02130 232 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02130 Gma-Chr13 36397949 36400252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02130 6 218 C3H Transcription Factor Family AT4G27470 39.640 6.87e-49 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02130 K10666 - gmx:100807061 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00696 15 5713846 5714544 Gma13g02130 13 36397949 36400252 GST
Gma07g01905 07 40294914 40295672 Gma13g02130 13 36397949 36400252 PCT
Gma13g02130 13 36397949 36400252 Gma07g01905 07 40294914 40295672 PCT