Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02113 ATGGCCACGCCTCCTATTGATCGCTGGGACGCTGATAAAATACTTCGATTATATTTGCATGATTATATGATCAAAAGGGGAATGCACAACGCTGCTGAGATTTTCAAGAAGGAAGCACAAGTTCCCGATCACCCTGTTTATTCAGTGGTTGATTCTCCAGATGGATTTCTGCTTGAATGGTGGTCTATTTTCTATGAGGTATTTAACTCTAGGCAAGGGAAGGACCTAGAGACTGGGCCAGGGTCCTCTAGTAAGGTGGTCCCAATGATGACACATAATGCAAGGAATAATGCTCCCCCGAGAATCCCTCAAATATCAATGAGTGAGCAGAGAACTCCACAATTTCAAGTCAACTCCAGCTTTAACAACATGATGGCTCAACCAGCCGTTTGTGTAATACCTTCAACAATGTACAATAAAGAAGAGCATCTTGGATATCTGCCCGAAAATGTTGAACCAAGTTTGCATGATGTTATAAAAAATAACCTGACGTTCTTGTCAGGGATTAGTTCAAATTATCCACCGCAAGATGTACTAAGCAAGCAGGCCCAGAAGCAAGTCTTTAAGGATAGTAGAGTTGGCATGAGTGTGGAGAGGGATATACCTAGGGACCCATTGGATGTAATGCAAAAAACAATGCTTCCTTTAGATGGACTTCATGAAACAAAAACCAATGAAGCTCTCAATATAGTGCCACTAAATGGATGGCCAATAAATAAGTGTCAAATGTTGAAAACACAAAATCAGGATGCAATCCTTGCTCAAGCAATTGCAGGTACTTCTAAAAATCAGACTTCCACAGTTCCTGAAAACTCTAGCAAATGCAACACTAGGAAGATTTCTGAGACTGAATCAAGGGATAAGGATAAGCAGATGATAAACCAAATGATTACAACTGTAGAACATCAACACCAGCAGGATCAACAAATGCAGATGCAGTCCCAGAATAATAACAGAAAAAGAAAGACAACAGAATCCATAAGACCTGGAGAAAGTGCCCGGAACTGTGAGGATACAGCCAATGGAAAACCTTTGGATGAAAATGTGGAGTCTTTCCTGTCTTTAGAAAATGAACACGCTGATCATAAAATTGCACCCTTCAGAAATCTGAAACGAACTTCAGCCACATGCAGAAATGAAAAAAAAGGTTTTTCATTCAATGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCTAGCCATTTTTCATCGGATGGAAAAGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAAATTTTGATTGTGTAACTACTACAGAGACACATTCACTTCTTGTTACAGATGTTCGGTTTAGACCAGGTTCAACTATCTTTGCTACTTCGTCCTTTGATAGATCTGTGAGACTATGGGATGCAGCCAGACCAACCAGTTCTCTGCTCAAACTTACTGGGCATGCCGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAAGTGGACCTTCTTTGCTCATGTGATAGTAATGATGTAATTCGACTGTGGAATATCAATCAAGGTGTTTGCATGCATATCACTAAGGGAGGTAGTAAACAGGTCAGATTCCAGCCTAGTTTTGGGAAGTTTTTGGCTACTGCTACAGAAAATAATATCAAAATATTTGATGTGGAGACCGACAGTCTTCTGTACAATCTAGAGGGACATGTTAATGATGTTCTCTCCATTTGTTGGGATAAAAATGGAAACTATGTTGCCTCCGTCAGTGAAGATACTGCACGTATCTGGTCATCAGACGGAAAATGCATAAGTGAATTGCATTCAACCGGAAACAAGTTCCAATCATGCGTATTTCATCCAGAATATCATAACCTCTTAGTTATTGGTGGCTATCAGTCCCTGGAATTGTGGAGTCCCTCTGAGAGCAGTAAAACATGGGCTGTTCCAGCTCACAAGGGATTAATTGCTGGACTAGCAGATTCTTCCGAAAATGAAATGGTTGCCTCAGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 2022 0.406 MATPPIDRWDADKILRLYLHDYMIKRGMHNAAEIFKKEAQVPDHPVYSVVDSPDGFLLEWWSIFYEVFNSRQGKDLETGPGSSSKVVPMMTHNARNNAPPRIPQISMSEQRTPQFQVNSSFNNMMAQPAVCVIPSTMYNKEEHLGYLPENVEPSLHDVIKNNLTFLSGISSNYPPQDVLSKQAQKQVFKDSRVGMSVERDIPRDPLDVMQKTMLPLDGLHETKTNEALNIVPLNGWPINKCQMLKTQNQDAILAQAIAGTSKNQTSTVPENSSKCNTRKISETESRDKDKQMINQMITTVEHQHQQDQQMQMQSQNNNRKRKTTESIRPGESARNCEDTANGKPLDENVESFLSLENEHADHKIAPFRNLKRTSATCRNEKKGFSFNEVGCLHSSKSKVLSSHFSSDGKVLASAGHEKKVFIWNMENFDCVTTTETHSLLVTDVRFRPGSTIFATSSFDRSVRLWDAARPTSSLLKLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRLWNINQGVCMHITKGGSKQVRFQPSFGKFLATATENNIKIFDVETDSLLYNLEGHVNDVLSICWDKNGNYVASVSEDTARIWSSDGKCISELHSTGNKFQSCVFHPEYHNLLVIGGYQSLELWSPSESSKTWAVPAHKGLIAGLADSSENEMVASASHDHCVKLWK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02113 673 Gene3D - 525 673 IPR015943 GO:0005515
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 434 466 - -
Gma13g02113 673 ProSitePatterns Trp-Asp (WD) repeats signature. 497 511 IPR019775 -
Gma13g02113 673 Gene3D - 371 524 IPR015943 GO:0005515
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 466 IPR001680 GO:0005515
Gma13g02113 673 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Gma13g02113 673 CDD WD40 388 673 - -
Gma13g02113 673 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 673 IPR044716 GO:0003714
Gma13g02113 673 SMART WD40_4 552 590 IPR001680 GO:0005515
Gma13g02113 673 SMART WD40_4 632 673 IPR001680 GO:0005515
Gma13g02113 673 SMART WD40_4 385 424 IPR001680 GO:0005515
Gma13g02113 673 SMART WD40_4 513 549 IPR001680 GO:0005515
Gma13g02113 673 SMART WD40_4 470 510 IPR001680 GO:0005515
Gma13g02113 673 SMART WD40_4 592 631 IPR001680 GO:0005515
Gma13g02113 673 SMART WD40_4 427 466 IPR001680 GO:0005515
Gma13g02113 673 MobiDBLite consensus disorder prediction 261 345 - -
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 673 - -
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 673 IPR001680 GO:0005515
Gma13g02113 673 SUPERFAMILY WD40 repeat-like 385 673 IPR036322 GO:0005515
Gma13g02113 673 MobiDBLite consensus disorder prediction 261 276 - -
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 514 - -
Gma13g02113 673 MobiDBLite consensus disorder prediction 277 291 - -
Gma13g02113 673 Pfam WD domain, G-beta repeat 474 510 IPR001680 GO:0005515
Gma13g02113 673 Pfam WD domain, G-beta repeat 555 590 IPR001680 GO:0005515
Gma13g02113 673 Pfam WD domain, G-beta repeat 429 466 IPR001680 GO:0005515
Gma13g02113 673 Pfam WD domain, G-beta repeat 641 673 IPR001680 GO:0005515
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 433 IPR001680 GO:0005515
Gma13g02113 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 519 IPR001680 GO:0005515
Gma13g02113 673 MobiDBLite consensus disorder prediction 292 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02113 Gma-Chr13 36227267 36234103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02113 437 630 Miscellaneous Gene Families AT5G08390 26.368 2.99e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma13g02113 WD40 0.041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02113 - - gmx:100783354 1335.09