Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02101 ATGTCGCTCCCCGATTCTCCCGTCGCCAACGATGACGAAATCGATCCATCGCTTGACgaagaagaagaagaagaagaaatagaggaggaggaagaggaggaggaggaagaagtcgaggaagaagtggaggaggaagaggtagaaggagaagaagtagaagaagacgaggttgatgaagaagaggaagaggaagaggaagtggtcgaggaagaagtagaagaggaagaggaagaggaagtggtcgaggaagaagtagaagaggaagaggaagaggaagaattagaagagatagaggtggaggaagaagaagaggagagcgaacaacgagcagaagaaatggaggaggaagaggaagaagaagtcgaagtggaagaggagggggaggaagaagaagtcgaagaggaggaggagggggaggaagaagaagtcgaagaggaggaggaggaagaagaagtcgaagtcgaggaggaggaggaggaggaagaagaagtcgaagtcgaagagaaggaggagaaagaagaTGAGGAACAACAACAACAACAGCAAGAGACAGTGGAGGAGAAGAAGGAAGAGCGACAACAGCAACAAGAAGCAGAAGAAGCAGTGAAGGAACAACAAAAAAAACAACAACAAGAAGCAATGGAGGAGAAGGAGGAGGACAAATTGGCGGTGCCAGGTTCTCCACTCGATGCCGATAAGGATCGCCAAGATTCGAGCCAACATATGGAGTTTGAGGGGCAAGACAAAATCTTGGGACCAGTTTCTTCTGTGGCTGAAAACCCTGAAGTGATGCCACCATCTAGTATGCATTGCTTGGAAGAGAATGATGCCATGCTAAAAAAAAGTGAGATACCTACATTGGAAAAGGACGAGCTTCCCCTGAAATATGAATTTTCGAGCCATCCAAAATCAAGAGAAAATCTGACTTCTGTTGAAGATTACAGAAGTCAAGTATTCGATGTTGAAGTTGAAAATGCTGGATTGCTTCTGCAGAATGAAACATTTGGAGGATACAGTGAGCCAGGTTGCAATAGCAAAGCTAATTTATGTGGTGATAATAATATTGATTCCAGGGCCAGGGCCACCAAGTCATCTAGTGATACTGTACAAGATATGGTTATTGGCCCCCTACCAAGAGATTGCCTTGTTGAAGATTCTAATGGTGGTCAGAATTCTAGAATCAAAATCATGCAGTCGGAGATAGAGTCAAGGGATAATGTGAAACAAATGACATCAAGGACTAGAAGTCTGTCTCCTGGTGCTGAGATTAAAGATGGAAACAAACGCCCCAGAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGGGGCCAATATTGACCAGGAGGCTGAAGCAGACTTAGTTACTACTCATCAGAAGAGACAGTTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATCAAGGATGAATCAGCAAGAAGCAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAAGTTTCCGCTGAGGGACAACTTGGTTCCAGAGAATAGATTTCCATTTAGTGCATCAGACAACTATTTTAGCTCAAATCTTTCTTTGACTTCAACTCGTGCAGATGGAATGGCTACTCTTAGGAACCAACATATGTACAAAGGATATACTTCCACACTTTTGAGCCATTCACCAAATTTGAGCCTGGTTTCTCAATTTCCAGCTTCAAGTATGCCACTCTCCCAGCAGATTCTAGCCCAATCAGGACGTTCACTGTCTTTTAGTAATGTGGATTCTAAAAAATTTTTGAACACTGACAAAGAATATCTCACATCTAAGTCCACTTTCTCTGGTTCTGGTTCTGGTTCAGGGCGGGAAGATTTTTCTCTTGTTAATTTGTCTAGGGTTCCATCATATCCTGCTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTTCGACCATCTTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAAATACCTAATATAGGAGATGGGTCTTTGAAGGCTTCCCTTTTAATTCATGGATCAAATATACAGGCATCATCACAGGTTCGGACATATGGTGATTCTGCTGTAGTTGGGAAACACATGGCCAATCTTAATGATGACAAAAGTTCTGTATCATCTCATAATAAATTTTGTGAAAATGAGCCAAATaaaaattgtcttcctcgtgaaaaagattgtcttccacctgaaaCAGAGATAACATCAGGAACTTATGTACACTATCAAGGTAAAATGGGCATGGGGCAACATACCTTTGAGGTTGCAGATAATAAAAAAAAAGAGAGAGATTTGACTGAGTGTGATGCTAGATGTCATGGTGAAGGATCAGGGCGTAAAAAGAAGAGAGTAGACAGGGATAAGAAAAATCATGAAATGGATGTCGACTTTCAGATGGATGGCAGCATGCAGAAGGAATCGAAGGCACTGAAATTTTTCCGCGCGGTTCTTATTGATCATGTTAAAGAGTTGTTAAAACCAGCTTGGCACGAGGGTCGTCTTAGCAAGGACACACATATAATGATAGTCAAAAAATCAGTTGACAAGGTTGTTAACACCTTGGAACCCCATCAGATTCCGACCATAGATACTGCTAAGCAATATGTTTCTTCAAGTCAGGTGAAAATTGCAAAGCTGGTTAATGGATATGTCAATAAATATGGCAAATCTTGA 2760 0.3308 MSLPDSPVANDDEIDPSLDEEEEEEEIEEEEEEEEEEVEEEVEEEEVEGEEVEEDEVDEEEEEEEEVVEEEVEEEEEEEVVEEEVEEEEEEEELEEIEVEEEEEESEQRAEEMEEEEEEEVEVEEEGEEEEVEEEEEGEEEEVEEEEEEEEVEVEEEEEEEEEVEVEEKEEKEDEEQQQQQQETVEEKKEERQQQQEAEEAVKEQQKKQQQEAMEEKEEDKLAVPGSPLDADKDRQDSSQHMEFEGQDKILGPVSSVAENPEVMPPSSMHCLEENDAMLKKSEIPTLEKDELPLKYEFSSHPKSRENLTSVEDYRSQVFDVEVENAGLLLQNETFGGYSEPGCNSKANLCGDNNIDSRARATKSSSDTVQDMVIGPLPRDCLVEDSNGGQNSRIKIMQSEIESRDNVKQMTSRTRSLSPGAEIKDGNKRPRIICDFFAKGWCIRGSSCSFLHIKDTGANIDQEAEADLVTTHQKRQLKVEEGVRENVERSRMNQQEATPSWHPSQEKQKFPLRDNLVPENRFPFSASDNYFSSNLSLTSTRADGMATLRNQHMYKGYTSTLLSHSPNLSLVSQFPASSMPLSQQILAQSGRSLSFSNVDSKKFLNTDKEYLTSKSTFSGSGSGSGREDFSLVNLSRVPSYPAGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIHGSNIQASSQVRTYGDSAVVGKHMANLNDDKSSVSSHNKFCENEPNKNCLPREKDCLPPETEITSGTYVHYQGKMGMGQHTFEVADNKKKERDLTECDARCHGEGSGRKKKRVDRDKKNHEMDVDFQMDGSMQKESKALKFFRAVLIDHVKELLKPAWHEGRLSKDTHIMIVKKSVDKVVNTLEPHQIPTIDTAKQYVSSSQVKIAKLVNGYVNKYGKS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02101 919 Coils Coil 17 223 - -
Gma13g02101 919 ProSiteProfiles Zinc finger C3H1-type profile. 428 455 IPR000571 GO:0046872
Gma13g02101 919 SMART c3hfinal6 429 454 IPR000571 GO:0046872
Gma13g02101 919 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 209 919 - -
Gma13g02101 919 SUPERFAMILY CCCH zinc finger 428 452 IPR036855 GO:0046872
Gma13g02101 919 MobiDBLite consensus disorder prediction 12 174 - -
Gma13g02101 919 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 452 IPR000571 GO:0046872
Gma13g02101 919 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 209 919 - -
Gma13g02101 919 MobiDBLite consensus disorder prediction 483 509 - -
Gma13g02101 919 MobiDBLite consensus disorder prediction 175 244 - -
Gma13g02101 919 MobiDBLite consensus disorder prediction 404 424 - -
Gma13g02101 919 MobiDBLite consensus disorder prediction 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02101 Gma-Chr13 36130920 36137697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma13g02101 zf-CCCH 5.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02101 - - gmx:100780664 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00727 15 5977052 5983667 Gma13g02101 13 36130920 36137697 GST