Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02098 ATGGCGCCGAGGGATCATAAGACAAGCAACGCTAAGGCTAACGGTAACGGTAACAGCGGGGTGAAGGAGGTGCATTTTCGTggagtgagaaagaggccgtgggggagatacgccgcggagatcagagatcccggcaagaagagccgcgtctggctcggaaccttcgacacggcggaggaggcagcgcgtgcctacgacgccgcagcacGAGAGTTTCGCGGCCCTAAGGCCAAGACAAACTTCCCTCTCCCTTTGGAAAATGTTAAGAACTCGAGCCCCAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCCGATTCCTCGCCTCTAGACCTCAACCTCGCCCCTGCCGCCGCCGCATCCGCTCGATTCCCCTTCCAGCACCAGTTCCCGGTTTTTACCGGCGCGGTGCCTGCGGCAAATCAGGTTTTGTACTTCGACGCTGTCCTACGCGCCGGCATGGCCGGTCCACGTGGCTTTGCGTTtggctacaatcatcatcccgttgcggcgaAGAAGGATAGGGTTAGAAGTTTGAATGATGAAAATGAATTTCATAATGGTCAAAAATTAAGTAAAGTCAAGTTGTCTTATGGTTATAGAGTGTTCCTCTTAATGCTGTATTTCTCGAGGATAATTGGATTGGCCTTTATCGCACAAGGAAGCGATGAGATTATCAGTTGA 699 0.4063 MAPRDHKTSNAKANGNGNSGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPLENVKNSSPSQSSTVESSSRDRDVAADSSPLDLNLAPAAAASARFPFQHQFPVFTGAVPAANQVLYFDAVLRAGMAGPRGFAFGYNHHPVAAKKDRVRSLNDENEFHNGQKLSKVKLSYGYRVFLLMLYFSRIIGLAFIAQGSDEIIS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02098 232 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Gma13g02098 232 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Gma13g02098 232 MobiDBLite consensus disorder prediction 84 103 - -
Gma13g02098 232 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Gma13g02098 232 MobiDBLite consensus disorder prediction 78 111 - -
Gma13g02098 232 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Gma13g02098 232 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Gma13g02098 232 MobiDBLite consensus disorder prediction 1 27 - -
Gma13g02098 232 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Gma13g02098 232 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Gma13g02098 232 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Gma13g02098 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 88 - -
Gma13g02098 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 87 161 - -
Gma13g02098 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 87 161 - -
Gma13g02098 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02098 Gma-Chr13 36084939 36087147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02098 1 137 AP2-EREBP Transcription Factor Family AT5G44210 51.235 2.70e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g02098 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02098 K09286 - gmx:100170742 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00730 15 6014684 6015615 Gma13g02098 13 36084939 36087147 GST