Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02073 ATGCCCCCAACCTTTTCCCATTTGTGCTATTCCATAGATATATGCCAAGTCCAAAACCACTTGCCAACTTGCCATTCCTTCAAAAACCAAAGCCAGACCGACCCTAAGAAGAAACCAACAAACATGGGAAGCAAGAAAACCTACGAGGAAGAAGAAAGCACGGCTCTATTTTCCCATTCCCAAACACAAACAGACTTGTTGTTACCCTTCAACGAGAACGACCCACAGGACATGGTCATATACCAAGTCCTCCACGAAGCCAATGCTCTCACCAACACATTCCTCCCTCAGCCCACCAGAAACATAACAAAGAAGCACTACAGAGGAGTCCGCCGCCGTCCTTGGGGAAAATACGCCGCTGAGATTCGCGACTCGGCGCGCCACGGCGCCAGGATATGGCTCGGCACCTTCCTAACCGCTGAAGAGGCTGCCATGGCTTATGACCGAGCCGCGTTCAAGATGAGGGGCTCCAAGGCTTTGCTCAATTTCCCAGCTGAAATTGTTGCTGctgctactgcaacagagttatctttcaaaagtagtagtaataataataataataataataataacaatcccgatgctgtttctGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCACTTGGGTAAATAGGAATCAGTCAGAAATCACAAGTGGCACAGGTTAG 675 0.44 MPPTFSHLCYSIDICQVQNHLPTCHSFKNQSQTDPKKKPTNMGSKKTYEEEESTALFSHSQTQTDLLLPFNENDPQDMVIYQVLHEANALTNTFLPQPTRNITKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFLTAEEAAMAYDRAAFKMRGSKALLNFPAEIVAAATATELSFKSSSNNNNNNNNNNPDAVSDSSAGSSCTNNSTWVNRNQSEITSGTG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02073 224 PANTHER DNA-BINDING DOMAIN 97 186 IPR044808 GO:0003700|GO:0009873
Gma13g02073 224 CDD AP2 105 165 IPR001471 GO:0003700|GO:0006355
Gma13g02073 224 MobiDBLite consensus disorder prediction 184 224 - -
Gma13g02073 224 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Gma13g02073 224 PRINTS Ethylene responsive element binding protein signature 146 166 IPR001471 GO:0003700|GO:0006355
Gma13g02073 224 Pfam AP2 domain 106 156 IPR001471 GO:0003700|GO:0006355
Gma13g02073 224 Gene3D AP2/ERF domain 105 166 IPR036955 GO:0003700|GO:0006355
Gma13g02073 224 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 97 186 - -
Gma13g02073 224 SUPERFAMILY DNA-binding domain 106 166 IPR016177 GO:0003677
Gma13g02073 224 MobiDBLite consensus disorder prediction 28 51 - -
Gma13g02073 224 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Gma13g02073 224 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02073 Gma-Chr13 35861885 35862971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02073 68 168 AP2-EREBP Transcription Factor Family AT3G23240 53.636 1.46e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g02073 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02073 K13433 - gmx:100775316 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00750 15 6165592 6166496 Gma13g02073 13 35861885 35862971 GST