Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02024 ATGTCAGAAGGGTATGAAATTCATAACAATGAGGAAACTTCATCGGGATGTTCCCAGAAATGCTCTTCATTTGACTTGAATGAAGAATTAGCTTGCAGTACTGAAGATAACACTGATACAAAAGAGTGCTATGAGCTCACAACAACCAATGAGAAAGCAAAGGATGAGGGCACTTCAGCGAATGGAAGTAGCATATCATCAAGAGAAGGAAATGAGAGAAGAGGAACAACGGTAAGACAATATGTTAGATCAAAGATGCCTAGGCTTCGGTGGACTCCTGAGCTTCATCATTCATTTGCGCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCTACACCCAAGTTGGTGCTTCAACTGATGAATGTGCGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGGAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTACAGGTCAAACCAGGAAGTAGTTCGTAGACCTCTGATACTCCATCAGTCCATAAGTCCTCAACAACATCTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTAATTTCAACAAACATAGTCATTTCCCAAGTCTCCTGCAGCCCTCCTTCTCCCTATCACGTTCACTTACAAACGACACCGATTCAAGGCACCAGCATTGGTACATCAATCATCAAGCTTTTAGAATACCAATAGCTTCAGGCCAAATTCAACCAAAGGATACACGCGGCAGAATTGCCCCCATGAGACCAAGCCAATTGCTTGAAGAGAAAAGGTGGCCTCCGTTAGAAATTTTGAACAATCATCAATCGAAGTTCCAAAAGTTACCTTCCATTGATTCTCCTAAAATTGGGTCACAAGCTATTCAACCAGCTGAATGGAGTAGTTTTATGAACAACACAAGCATCATAGATTATCTATCGAACAACTCCAATGAACCTCGCAACAATTCCAACAGCTTAAAGCTAGAATTTGGTCCTCCATTTCGGATTAAGAAAGACGAGCAACAATTTCTTGATTTGCAACTGGGTTTGAGTCACACATGTACAGTTGGAACCGATGGCAAGATGGATCATTATAGAGAAACCCCAGAAATCAGCACTAAGCTTTCACTTTCTTAG 1122 0.4189 MSEGYEIHNNEETSSGCSQKCSSFDLNEELACSTEDNTDTKECYELTTTNEKAKDEGTSANGSSISSREGNERRGTTVRQYVRSKMPRLRWTPELHHSFAHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRSNQEVVRRPLILHQSISPQQHLKMGNGGIILASNFNKHSHFPSLLQPSFSLSRSLTNDTDSRHQHWYINHQAFRIPIASGQIQPKDTRGRIAPMRPSQLLEEKRWPPLEILNNHQSKFQKLPSIDSPKIGSQAIQPAEWSSFMNNTSIIDYLSNNSNEPRNNSNSLKLEFGPPFRIKKDEQQFLDLQLGLSHTCTVGTDGKMDHYRETPEISTKLSLS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02024 373 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Gma13g02024 373 MobiDBLite consensus disorder prediction 54 71 - -
Gma13g02024 373 Gene3D - 86 143 - -
Gma13g02024 373 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 373 - -
Gma13g02024 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Gma13g02024 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 373 IPR044848 GO:0003700
Gma13g02024 373 MobiDBLite consensus disorder prediction 54 77 - -
Gma13g02024 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Gma13g02024 373 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02024 Gma-Chr13 35511560 35515226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02024 78 216 G2-like Transcription Factor Family AT2G42660 47.586 2.10e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma13g02024 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02024 - - gmx:102669757 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00789 15 6471269 6473990 Gma13g02024 13 35511560 35515226 GST
Gma05g01591 05 37684127 37689959 Gma13g02024 13 35511560 35515226 PCT
Gma08g01074 08 9122640 9128747 Gma13g02024 13 35511560 35515226 PCT
Gma13g02024 13 35511560 35515226 Gma05g01591 05 37684127 37689959 PCT
Gma13g02024 13 35511560 35515226 Gma08g01074 08 9122640 9128747 PCT