Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02020 ATGGATAACAAGGCAACAATTCTGATGCAAAAGTACGAGGTTGGACATTTTCTTGGCCAAGGCAATTTCGCCAAAGTTTACCACGCAAGGAACTTGAAGACTGGCCAGAGCGTCGCCATCAAAGTTTTCAACAAAGAGTCGGTGATTAAGGTGGGGATGAAGGAGCAACTCAAGCGCGAAATCTCTCTGATGCGCCTTGTGAGGCACCCCAACATTGTTCAGCTTCATGAGGTCATGGCAAGCAAGACAAAGATATATTTTGCAATGGAAATGGTGAAAGGTGGTGAACTTTTCTATAAAGTGTCCCGAGGGAGGTTGAGGGAGGATGTGGCAAGAAAATATTTCCAGCAGCTGATTGATGCTGTTGGTCACTGCCACAGCCGAGGGGTGTGTCACCGCGATCTCAAGCCAGAGAACCTTCTTGTTGATGAGAACGGGGACCTCAAAGTTACGGATTTCGGTTTGAGTGCATTGGTGGAATCCAGGGAGAATGATGGCCTTCTTCACACAATATGTGGCACTCCAGCTTATGTAGCTCCTGAGGTGATAAAGAAGAAAGGATATGATGGAGCCAAGGCTGATATTTGGTCTTGTGGGGTCATTCTCTTTGTTCTCTTGGCCGGTTTTCTTCCTTTCAATGATAAAAATCTTATGCAGATGTACAAGAAGATTATCAAAGCAGATTTCAAGTTCCCGCATTGGTTCTCTTCAGATGTGAAAATGCTTCTTTATAGGATCCTTGATCCCAATCCAAAGACAAGAATTGGTATTGCTAAGATTGTGCAAAGCCGTTGGTTTAGAAAGGGGTATGTGCAGCTTGAAGCATTTCAGCTGCCACCATTGTCCCCTAGAAATGCTAAGGATATCTCAGATGTTCAAGCTGCATTTGCCTCTTCATCAGATTCAGATTCAGATGGTAGTCCAATGTCAAATAAAGAAGATAGCCCCATGAAGCTATATCGGTTCAATGCATTTGATTTGATATCAATCTCTTCAGGTTTTGATCTTTCTGGTTTGTTTGAGGATAATCAGAATGGAAGACAATTGGCAAGATTTACTACTAGAAAACCACCTTCAACCATTGTGTCAATGCTTGAAGAGATAGCACAAATAGATGGTAGATTTAAGATCTTGAAGAAAAATGGAGTTGTTAGATTGGAGGAATACAAGGCAGGGATAAACGGCCAACTCACTATAGATGCTGAAATTTTTGAAGTTACATCTTCCTTTCATGTTGTTGAGGTGACGAAAATTGCAGGAAACACATTGGAATATTGGAAATTCTGGGACCAGTACTTGAAACCTTCTTTGAATGAAATGGTTTGGGTCTGGCAAAGATATGAGCAACAGCAGTAG 1356 0.4211 MDNKATILMQKYEVGHFLGQGNFAKVYHARNLKTGQSVAIKVFNKESVIKVGMKEQLKREISLMRLVRHPNIVQLHEVMASKTKIYFAMEMVKGGELFYKVSRGRLREDVARKYFQQLIDAVGHCHSRGVCHRDLKPENLLVDENGDLKVTDFGLSALVESRENDGLLHTICGTPAYVAPEVIKKKGYDGAKADIWSCGVILFVLLAGFLPFNDKNLMQMYKKIIKADFKFPHWFSSDVKMLLYRILDPNPKTRIGIAKIVQSRWFRKGYVQLEAFQLPPLSPRNAKDISDVQAAFASSSDSDSDGSPMSNKEDSPMKLYRFNAFDLISISSGFDLSGLFEDNQNGRQLARFTTRKPPSTIVSMLEEIAQIDGRFKILKKNGVVRLEEYKAGINGQLTIDAEIFEVTSSFHVVEVTKIAGNTLEYWKFWDQYLKPSLNEMVWVWQRYEQQQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02020 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gma13g02020 451 ProSitePatterns Protein kinases ATP-binding region signature. 18 50 IPR017441 GO:0005524
Gma13g02020 451 Gene3D Kinase associated domain 1, KA1 321 443 - -
Gma13g02020 451 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 451 - -
Gma13g02020 451 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Gma13g02020 451 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02020 451 CDD CIPK_C 323 438 - -
Gma13g02020 451 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02020 451 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02020 451 Gene3D Transferase(Phosphotransferase) domain 1 2 320 - -
Gma13g02020 451 PANTHER - 2 451 - -
Gma13g02020 451 SUPERFAMILY Protein kinase-like (PK-like) 8 310 IPR011009 -
Gma13g02020 451 Pfam NAF domain 322 377 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02020 Gma-Chr13 35472872 35474227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02020 1 445 CBL-interacting serine-threonine protein kinases AT5G45820 61.024 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gma13g02020 Pkinase 1.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02020 K07198 - gmx:100807927 895.575