Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02016 ATGTCTTCCTCTGTCACCAATGGCGATGATTCTCTCACTGGCCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCTGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTTTTGGATCATCCAAATGTCATCTCTCTGAAGCATTGTTTCTTTTCAACTACAAGTACAGATGAGCTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCATTAAGCACTATACCAATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTACATGTACCAGATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGTGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGATGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAATTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATGAAGCGGCAAATAGGGCTGCAATTTGTTCGTCCGGCAGGATCATGA 1125 0.4178 MSSSVTNGDDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVIKHYTNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSEASPELVNKVIPDHMKRQIGLQFVRPAGS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02016 374 SUPERFAMILY Protein kinase-like (PK-like) 33 347 IPR011009 -
Gma13g02016 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Gma13g02016 374 CDD STKc_GSK3 29 321 IPR039192 -
Gma13g02016 374 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02016 374 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02016 374 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02016 374 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Gma13g02016 374 PANTHER BNAANNG31110D PROTEIN 3 368 - -
Gma13g02016 374 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Gma13g02016 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 368 - -
Gma13g02016 374 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02016 Gma-Chr13 35428816 35432669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02016 38 334 MAP Kinase Gene Family AT3G59790 34.740 9.56e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gma13g02016 Pkinase 7.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02016 K14502 - gmx:100810085 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01595 05 37718048 37721965 Gma13g02016 13 35428816 35432669 PCT
Gma08g01079 08 9163693 9168010 Gma13g02016 13 35428816 35432669 PCT