Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02007 ATGGGAGCAATGAGTgataatggaataagccgcagcagaaagaagtcatcatcaagagggcaccacaggtttgtaggggttcgacaaaggccatcagggagatgggtggctgagatcaaagactctctacaaaaagttaggctttggcttggaacatatgacactgctgaggatgcagctcgagcatatgataatgctgcacgagccttgagaggttccaatgctagaaccaacttTGAGTTGCCTGAGTCAGCTTCTTCTGGTGGTGCTAATAAGCGTGGTGGTTCCAAGTTTGTGCCTGAATGCACTGAACCCTTTTCTTTTGAGGATGTGAATGAGCCAGGTTCAGATGCAGAAGGCCTTCTTGGTGCACTTAAGGCAAAACTGCTTGATGGAAAGAAAGGGAAGTTTGATCAGTTTCAATTTCTTGGAAATTCTGCTGCTCAAGTTGTTCAATCTGGCATGGTTTCAAGATCAAGTCAGAATTGTTCTGGGAAGAAAGAGTTATTATTACCAATACCATCATCTTCAGCTAATGATACTGTTCTCACAAGGATGAATTATGGAACTGGAACCAGCCCTGTGCATGGTGTGATGAGTACTTTAGCTTCATCAAACACTTGTGCTAATAAGAGTGTGGTTATCCCAAATCATGATTATCATGAAGGAGCTGTAGCAAGCACAAGCAGTGGTAGAGTCAACTCTCATCAACTTTGTCAAACCCCACCTGTGGCAACATGGCCCAGTGAAGTGGCATATGATTTGCCTTGGCCTACACAATATATGAGCCAAGTTCTTCCTGATAATGGCCTTCTTGCATCTTCCAGCACTGCTGCAGCCACCTTGACTAATATATGGCCACTTTCTGGGGTAATTGAGTCTACTGTTGATATGACATGCATGGATCAGGGACCATCAAGTAGCAACAAAAGTGGCCAAATGATGAATATGGTGAGCATGCAGTTGCCTCTAGTTGGTGGTGCAAATGAAGGTCTTTGGACATTGGAGCAGCAACAGTTTGTGCAATGTGACCAGAACAACAGCTGGTTTAGTTTTAATGGATCTTGGGATCCTCTCCTCTATCTGAAAATGAGGAGTACTTGTGATGAATGGAAACCTTTTATAGTAATGATAGCAATTGATTTTTCTTTTGCGGCAGTGAATATTCTTCTCAAGAAAGTCCTTGAAGAGGGAATGAACCATTTGGTTTTTATCACATACCGGCTGTCAATTGCTACCATTTTCATAGCCCCAATCTGCTACTTTAGGGAAAGAAACGACAGACCAAGGCTCACATTTCGAATTTTATGTTACCTATTCTGCAGTGCCATTGTTGGGGCATCAGTGACTCAATACTTTTTCCTTATGGGGATCCAATATACTTCTGCTACCTTTTCTTGTGCTTTCATCAACATGGTGCCTGTGGTCACATTCATGATGGCATTACCATTTGGGTTAGAGACCGTGAAAATCAAATGCAAAAGTGGGAGAGCTAAGATTCTTGGTTCATTGGTGTGCATAGGCGGCGCATTGATGTTGACACTTTACAAAGGCAAGCCACTGTTTAATTTTTCTCACTATGAATCTGTATCTCCTGTGGCCAACAGTTCTGCAGTGAATCTAGCTTCTACAAGGACAAAGGGAAAATGGACTATTGGTGTAATAGCGTTGGTTTTGGGAACCATCTTTTGGTCTTCTTGGTTTATTTTACAGTCAAAAATAAGCAAGAGATATCCATGCCAGTATTCTAGCACAGCCATCATGTCCTTCTTTGGGGCCATTCAATCAGCTGTTATTTGCTTCTTCACTGACCACAACTTGTCCATTTGGGTTCTCAAGGGAAAGATACAAATCATTGCTATTCTATATGCTGGGATGATTGGTTCGGGTTTGTGTTTTGTGGGCATGTCATGGTGTGTGAAGAAGAGAGGTCCTGTCTTTACTGCAGCATTCAGTCCTCTTGTTCAGATAATGGCAGCAATGATTGATATCCCTGTCTTGCATGAGCAGCTCCATCTTGGAAGTGTGATGGGGTCTATCTTGGTGATTATTGGATTGTACATTCTTCTATGGGGTAAGAGCATGGAAATGCAGAATCGTGTGGTCAAGTTAGTCCAAGAAGCTGAAGAAACCAAGGAGCAAGAACCGCAACCGCAAATACAACAGTTGACAGTGTATGTTCACGCAGAATCGTTGCGGCGCGCTCCTATTATCACCGTAGACGGCGGAGGTGGCGGCAGAAACACGCCGAGACGGCGATCTCATGATGTAGATAAATGTTGGTTGAAAGAGGAAGAAGAAAAAGAAGAAGAAAAGCCGTATTGTAGAATGAGCCAACCAACGGTGATACTTGCCACTGCGAGCTATGATCACACCATTCGTTTTTGGGAGGCCAAGAGTGGCCGTTGCTACCGCACCATCCAATATCCTGATTCGCAAGTAAACCGGCTGGAGATAACCCCGGACAAACACTTCCTGGCTGCAGCTGGCAATCCTCACATACGATTGTTTGATGTTAACTCAAATAGTCCTCAACCGGTAATGAGCTATGATTCACATACCAATAATGTAATGGCAGTTGGGTTTCAATGTGATGGTAATTGGATGTATTCTGGTTCAGAGGATGGCACAGTTAAGATCTGGGATTTGAGGGCACCGGGTTGTCAAAGGGAATATGAAAGTCGTGCAGCTGTAAACACTGTTGTGCTACACCCAAATCAGACTGAACTAATATCTGGTGACCAAAATGGCAACATTCGTGTGTGGGATTTGACAGCAAATTCATGCAGTTGCGAATTGGTTCCAGAGGTGGATACAGCTGTACGCTCTTTAACAGTAATGTGGGATGGGAGCTTGGTAGTTGCAGCAAATAATCATGGGACATGTTATGTGTGGCGCTTGTTGCGAGGGACTCAGACAATGACAAACTTTGAGCCTCTTCACAAGCTGCAAGCACACAAGGGATACATTCTCAAATGTCTTTTATCACCCGAGTTCTGTGAACCCCACAGGTACTTGGCAACTGCATCTTCTGATCATACTGTCAAAATATGGAATGTTGATGGTTTTACCCTAGAAAAAACTCTCATAGGTCACCAACGCTGGGTGTGGGACTGTGTCTTCTCTGTGGATGGTGCCTACCTTATTACAGCTTCCTCTGATACAACTGCAAGGCTCTGGTCTATGTCAACTGGTGAAGATATTAAAGTTTACCAAGGGCATCATAAAGCTACAATTTGCTGTGCCCTACACGATGGGGCTGAACCCGCAGCTTCCTGA 3279 0.4074 MGAMSDNGISRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTYDTAEDAARAYDNAARALRGSNARTNFELPESASSGGANKRGGSKFVPECTEPFSFEDVNEPGSDAEGLLGALKAKLLDGKKGKFDQFQFLGNSAAQVVQSGMVSRSSQNCSGKKELLLPIPSSSANDTVLTRMNYGTGTSPVHGVMSTLASSNTCANKSVVIPNHDYHEGAVASTSSGRVNSHQLCQTPPVATWPSEVAYDLPWPTQYMSQVLPDNGLLASSSTAAATLTNIWPLSGVIESTVDMTCMDQGPSSSNKSGQMMNMVSMQLPLVGGANEGLWTLEQQQFVQCDQNNSWFSFNGSWDPLLYLKMRSTCDEWKPFIVMIAIDFSFAAVNILLKKVLEEGMNHLVFITYRLSIATIFIAPICYFRERNDRPRLTFRILCYLFCSAIVGASVTQYFFLMGIQYTSATFSCAFINMVPVVTFMMALPFGLETVKIKCKSGRAKILGSLVCIGGALMLTLYKGKPLFNFSHYESVSPVANSSAVNLASTRTKGKWTIGVIALVLGTIFWSSWFILQSKISKRYPCQYSSTAIMSFFGAIQSAVICFFTDHNLSIWVLKGKIQIIAILYAGMIGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIMAAMIDIPVLHEQLHLGSVMGSILVIIGLYILLWGKSMEMQNRVVKLVQEAEETKEQEPQPQIQQLTVYVHAESLRRAPIITVDGGGGGRNTPRRRSHDVDKCWLKEEEEKEEEKPYCRMSQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKHFLAAAGNPHIRLFDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGTQTMTNFEPLHKLQAHKGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSTGEDIKVYQGHHKATICCALHDGAEPAAS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats profile. 983 1028 IPR001680 GO:0005515
Gma13g02007 1092 Pfam EamA-like transporter family 375 513 IPR000620 GO:0016020|GO:0016021
Gma13g02007 1092 Pfam EamA-like transporter family 552 690 IPR000620 GO:0016020|GO:0016021
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 850 884 - -
Gma13g02007 1092 CDD WD40 783 1061 - -
Gma13g02007 1092 PANTHER WAT1-RELATED PROTEIN 373 713 - -
Gma13g02007 1092 ProSitePatterns Trp-Asp (WD) repeats signature. 1006 1020 IPR019775 -
Gma13g02007 1092 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats profile. 891 932 IPR001680 GO:0005515
Gma13g02007 1092 SUPERFAMILY Multidrug resistance efflux transporter EmrE 407 517 - -
Gma13g02007 1092 SMART WD40_4 1022 1061 IPR001680 GO:0005515
Gma13g02007 1092 SMART WD40_4 800 838 IPR001680 GO:0005515
Gma13g02007 1092 SMART WD40_4 763 797 IPR001680 GO:0005515
Gma13g02007 1092 SMART WD40_4 926 966 IPR001680 GO:0005515
Gma13g02007 1092 SMART WD40_4 976 1019 IPR001680 GO:0005515
Gma13g02007 1092 SMART WD40_4 843 882 IPR001680 GO:0005515
Gma13g02007 1092 SMART WD40_4 885 923 IPR001680 GO:0005515
Gma13g02007 1092 MobiDBLite consensus disorder prediction 1 27 - -
Gma13g02007 1092 ProSitePatterns Trp-Asp (WD) repeats signature. 910 924 IPR019775 -
Gma13g02007 1092 Gene3D - 781 1086 IPR015943 GO:0005515
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats profile. 1029 1070 IPR001680 GO:0005515
Gma13g02007 1092 SUPERFAMILY Multidrug resistance efflux transporter EmrE 615 694 - -
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1029 1066 - -
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 983 1021 - -
Gma13g02007 1092 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Gma13g02007 1092 ProSitePatterns Trp-Asp (WD) repeats signature. 869 883 IPR019775 -
Gma13g02007 1092 Pfam WD domain, G-beta repeat 1026 1061 IPR001680 GO:0005515
Gma13g02007 1092 Pfam WD domain, G-beta repeat 978 1019 IPR001680 GO:0005515
Gma13g02007 1092 Pfam WD domain, G-beta repeat 845 882 IPR001680 GO:0005515
Gma13g02007 1092 Pfam WD domain, G-beta repeat 888 923 IPR001680 GO:0005515
Gma13g02007 1092 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Gma13g02007 1092 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 891 924 - -
Gma13g02007 1092 SUPERFAMILY WD40 repeat-like 783 1064 IPR036322 GO:0005515
Gma13g02007 1092 PANTHER WAT1-RELATED PROTEIN 373 713 IPR030184 GO:0016021|GO:0022857
Gma13g02007 1092 SUPERFAMILY DNA-binding domain 24 80 IPR016177 GO:0003677
Gma13g02007 1092 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats profile. 850 884 IPR001680 GO:0005515
Gma13g02007 1092 Coils Coil 694 714 - -
Gma13g02007 1092 PRINTS G protein beta WD-40 repeat signature 1006 1020 IPR020472 -
Gma13g02007 1092 PRINTS G protein beta WD-40 repeat signature 1048 1062 IPR020472 -
Gma13g02007 1092 PRINTS G protein beta WD-40 repeat signature 869 883 IPR020472 -
Gma13g02007 1092 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 806 IPR001680 GO:0005515
Gma13g02007 1092 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gma13g02007 1092 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02007 Gma-Chr13 35343634 35357223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02007 371 624 Nodulin-like Gene Family AT3G30340 49.609 5.05e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g02007 EamA 3.4e-15 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02007 K08266 - gmx:100803670 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01598 05 37763651 37766144 Gma13g02007 13 35343634 35357223 PCT
Gma08g01083 08 9205320 9207879 Gma13g02007 13 35343634 35357223 PCT
Gma13g02007 13 35343634 35357223 Gma05g01598 05 37763651 37766144 PCT
Gma13g02007 13 35343634 35357223 Gma08g01083 08 9205320 9207879 PCT