Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02001 ATGACTAGGGCTGTCCGTAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATTCATTTGACTAATTGTATTCACCTGAAGAACCATATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGACCTAGTTGTGCTGCAGAGATCGCGGTCTCTTAGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTAGTTGACTTGCTTTTCAAAAGAGTTGAAAATGATGCCGTGTCTCAAGGGGGAAGGATGTCTGTAGGTGCCGAGCGAAGGAAGGAAGGGAGAAGATTGTCTGGAACTTCACCACCCTTGGTGAGTATAGGTTCATCAAGAGTTGCTCCGGGTGAGATTGGTAGGGGTAATGATGGGATAACGGCACCTAGTGAACGAAGTAGCAGGAGTGGATTGGGAGATGGAAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAATGATAGGCCTGACTTTTTGGATGTTAATCCAGAGGAGCCTCTCTATCAAGGTGGCAAAAGCTTGGCTGAAGATGTTATTTCAAGGCACTCAGAGTCTAAAGCTAGAAAGAGCAAACAAAGGGGGAAGAATGTTCGAGATGCCCAAGTTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGATTTAGCATCATCGAACATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAAGTTATTGAGGAGGTAGAATCCCGGATGCGCAGTCATGGCAGTGGAATGAATAAGGGAAAAAGGCGTAAGTTTCGAAGCGTGCGAAGAACTCGGGTTGCTACAACATCAAGAGATATTGGAGCTGAGAATGAAATCTCTGTGGCTTCCAACTCATTAGCCCACCATAAATATCACTTGGAGGAGGCTGATGAGTTTGCAGATGAAAATGTTACCAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACCTGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGACTCAAGGTTGAAGAAAGGGACATTTACTGCCAATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCGCTCAAGCTCATGTACGAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCTTCTGGATCTCATGCAAGCACTGAAAATGCTTGTTGGGATCATGACTACTCTGGGGAACTAGGTCTTTTTGGTGATAATTTATTCAAGCATGATGTTGATTCTGACCTCGCTTCAGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGTCACAGTAGACACCAAAGTTTAACACAAAAGTATATGCCTCAAACCTTCAGAGATATGATTGGGCAGAATTTAGTGGCACAAGCTCTTTCCAATGCAGTTATGAAAAGGAAAGTTGGGTTGTTGTATGTGTTTTATGGCCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTCTGAACTGTAATTCTTCAGAACACCCAAAACCTTGTGGTTTTTGCAATTATTGCGTAGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTTAGTAATTTTGACTTTGAGGGCATCATGGACCTACTTGACAATATGACTCTTTCCCAGCTTCCGTCTCATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAACAGATTGTTGGAATGCTATATCGAAGGTCATTGATCGAGTACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATATACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCAGACGGATCTTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCCGTTCCTCTTATTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTCGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGGAGGAAGTTCTTCCGGAGACAACCATTGTCCAAAGAAGACATGGAGAAGCTGCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCCTTACTTCAGCTTGCTCCAGACCAGCAATATGTGTTGCCAACTTCATCTGATAATAGTTTCAACCACAGTCCCTTTGCTTTaaaagatgcagatgcaagagaagcagctagactgactggtaatcctgttgacattcctaacaaagggagacggttatcaatggatgctagaattgaaaatttccatgctggaagctcagcaGATGGTATGACAAGGGGTCTTGGTTCTGAGAAAAAACGACATAGCGTGTCTGGTTTTACTCCTCAACATGCTCATTCACAaaccactgataagattaggatgagcgagaggcagattttgggtaaaaaccataaagaaattgaagagatatggttagaggtacttgagaggatacaagttactggtctgaaagagtttctgtttaaagaaggcaagctgatctctgttagttttggggcagctccaactgtgcagctaatgtttagttctcaattgaccaaatctactgccgagaagttcagaggtcatatcttacaagcatttgaatccgtccttggatcttctataacaatagaaattaGATGTGAGTTAAATAAAGATGCAGCCTCGGCTGTTCAACAACCTCTTACATTGCCCGCTACCAATGATAGTTCGTCCCAGATTAGAGACTTTAATGGTGTTGGCACTCTAGCTCATCCATCAGTAACTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCAGCTTCTCAAGTGGAGCACATGAATAGCGAGCAGCAGGTTGATGCTCATGGAACATCTTATAAAAGTTTAGAAGGTACAAGTATAGGACAATCATCAGCTTCCCAAAAAATGCCAATTGTTAAGTCGCATTTAGACGAAAGAAAGCTTATGGAGCAAGGTCAAAGTCGGAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTGATCCAACAGGCAGAAGGTCAGAGAAGTGGGTGGTCAAAACGTAAAGCGGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATCTGAGACTGGAACCAAGATCAAGGAGCTTGATATGCTGGAAAGCATCAAGAGTAACCCGGCGAAAGCTGTCACGCTTGAAAATTCGAAGCCGAAAGCCACGTGCACTGCTGAATCTTGTCTCATGTGGGAAATGTCTGTCTACAAAATCTCCAAGGTAG 3564 0.3847 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRMSVGAERRKEGRRLSGTSPPLVSIGSSRVAPGEIGRGNDGITAPSERSSRSGLGDGRRVGREESGRKNDRPDFLDVNPEEPLYQGGKSLAEDVISRHSESKARKSKQRGKNVRDAQVKTLSEQLNDVPLDSDDLASSNIHFRGRFPRQEKVIEEVESRMRSHGSGMNKGKRRKFRSVRRTRVATTSRDIGAENEISVASNSLAHHKYHLEEADEFADENVTRAPKNGCGIPWNWSRIHHRGKTFLDLAGRSLSCGLSDSRLKKGTFTANGRNISEMPVASERSSSCTKSDAEALPLLVEASGSHASTENACWDHDYSGELGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPQTFRDMIGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNFDFEGIMDLLDNMTLSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRVPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFALKDADAREAARLTGNPVDIPNKGRRLSMDARIENFHAGSSADGMTRGLGSEKKRHSVSGFTPQHAHSQTTDKIRMSERQILGKNHKEIEEIWLEVLERIQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCELNKDAASAVQQPLTLPATNDSSSQIRDFNGVGTLAHPSVTDSVEKRRGEIVEEAASQVEHMNSEQQVDAHGTSYKSLEGTSIGQSSASQKMPIVKSHLDERKLMEQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLICWKASRVTRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02001 1187 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 452 800 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma13g02001 1187 CDD HLD_clamp_pol_III_gamma_tau 626 689 IPR045085 -
Gma13g02001 1187 Gene3D - 444 623 IPR027417 -
Gma13g02001 1187 SMART AAA_5 485 626 IPR003593 -
Gma13g02001 1187 MobiDBLite consensus disorder prediction 146 171 - -
Gma13g02001 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 673 IPR027417 -
Gma13g02001 1187 MobiDBLite consensus disorder prediction 251 280 - -
Gma13g02001 1187 PANTHER PROTEIN STICHEL-LIKE 3 180 1154 - -
Gma13g02001 1187 MobiDBLite consensus disorder prediction 860 894 - -
Gma13g02001 1187 MobiDBLite consensus disorder prediction 434 453 - -
Gma13g02001 1187 Pfam DNA polymerase III, delta subunit 469 626 - -
Gma13g02001 1187 MobiDBLite consensus disorder prediction 259 275 - -
Gma13g02001 1187 Gene3D - 627 689 - -
Gma13g02001 1187 CDD AAA 467 626 - -
Gma13g02001 1187 SUPERFAMILY post-AAA+ oligomerization domain-like 697 800 IPR008921 GO:0003677|GO:0006260
Gma13g02001 1187 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1154 - -
Gma13g02001 1187 Coils Coil 762 789 - -
Gma13g02001 1187 MobiDBLite consensus disorder prediction 91 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02001 Gma-Chr13 35287190 35293341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02001 452 750 Core DNA Replication Machinery Family AT1G21690 24.183 5.03e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02001 - - gmx:100809005 2271.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00810 15 6677259 6683443 Gma13g02001 13 35287190 35293341 GST