Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01997 ATGGCTTCAGGGGCAATTTTCTCGTCGCTCCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTGGCCCCCGTTGACTTAAGCGACGTCGCTTTGGTTCAGACCCTCATCTCCGTTGCCAACGAGATTGTGTCGTGTTTTTCGAAGCGTAGTTTCTTCTTCCAGCGCAAGAACTCGCGGTCTCTGATCCGAAAAGTGGAAGTTTTTCAGTTGCTTTTGGAGTATTTGCGTGATTCCCAATCGGGTTCTTCGTGTCTTCCACCCACGGCGGTGCTTTGTCTCAAGGAGCTCTACCTCTTGCTCTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAATCGAGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCATGATTTGAACCAGGAGATTTCTACCCTTATGGATGTTTTTCCTGTTAAGGATGTTTTGTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTCTTGCAGAAACAGTCTAGAAGAGCTAAGCTTTTTATAGATATGAAGGATGATGCTCTCAGGCTTCGGTTTTTCTCCTTTCTTGATGAGTTTGAGAATGGAGGGATTCCTGATTCTGCTGAATTGGGGTCTTTCTATGTTGAGAAGCTGCAGATTGTTGATGCGGCTAGTTGTAGGACTGAAATTGAGGGCTTGGAGGAGCAGATTGTTAATCATGAAGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGGTTGGTGGCTATGACTAGATATTGCAGGTTTTTGCTCTTTGGCTTTGAGGAGGATGAGCTTGGTTTTGAGAGTGGAAGTCAGAAGAAGCCTAAGAGGAGGTTGATTACTCAGGAAATTGCTGAAACGTTTTTGACTGTTCCTAAGGACTTTTGCTGTCCAATTTCGTTGGATTTGATGAGAGACCCTGTGATTATTTCCACTGGTCAAACCTATGATCGGAGTTCAATTTCGAGGTGGATGGAAGAAGGGCATACTACTTGCCCCAAAACAGGTCAAATGCTTGCTCACACTCGTCTTGTTCCAAACCGGGCTCTTAGGAATTTGATTGTGAAGTGGTGCACTGCACATGGAGTTCCTCTTGAGCCACCAGAGGTCATGGATGCGATGGGTGAAGTTTTCCCGTCGGCCTGTCCCACCAAAGCTGCCCTTGAAGCCAACAGAGCCACAGCGACGCTTCTCATTCAACAGCTCGCTGGTGGGTCTCAAGCTGGGAAGACTGTGGCTGCCCGGGAAATAAGGTTGCTTGCAAAAACTGGAAAGGAAAACCGAGCCTTCATTGCAGAAGCAGGGGCAATTCCGTATCTGAGGAATTTACTTTCATCGCGAAATGCTGTTGCTCAGGAGAATTCTGTGACTGCGCTGCTCAATTTGTCCATTTTTGACAAGAACAAAAGTAGGATTATGGACGAGGAAGGGTGTCTAGGATCGATTGTTGATGTGTTGAGATTTGGACACACCACAGAGGCAAAGGAAAATGCTGCTGCGACGTTGTTCAGTCTATCGGCCGTCCATGACTATAAGAAAATAATTGCAGATGAGATGCGAGCAGTCGAGGCCCTCGCAGGACTGTTGCAAGAGGGGACTCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTCAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATCGAGGCCGGGGCAGTGACAGCTCTTGTTAGTGCTTTGGGGAATGAAGGAGTTTCAGAAGAAGCAGCTGGTGCACTGGCCTTGATCGTCCGGCAGCCAATTGGGGCCAAAGCAGTGGTGAATGAGGAATCAGCAGTGGCTGGATTAATTGGAATGATGCGTTGTGGAACACCGAGAGGTAAAGAGAATGCGGTTGCAGCGATGCTCGAGTTGTGCCGGAGTGGAGGTGCAGCTGCAACAGAAAGGGTTGTGAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTTCTTTTTACGGGGACAAAACGCGCAAGAAGAAAAGCAGCTTCACTTGCAAGAGTTTTTCAGAGATGTGAGCATGCAACTTTACATTATGGTGGATTAGGTGTTGGCTATGCGTTTGCTAGCAATTCAAATACAACTAGGGATACCAGCTTTGCGGGTGATGTTTCAGTACCAATGTCCATTTCTGTGTTATAG 2151 0.4751 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLISVANEIVSCFSKRSFFFQRKNSRSLIRKVEVFQLLLEYLRDSQSGSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLMDVFPVKDVLLSKDVREQVELLQKQSRRAKLFIDMKDDALRLRFFSFLDEFENGGIPDSAELGSFYVEKLQIVDAASCRTEIEGLEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELGFESGSQKKPKRRLITQEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVKWCTAHGVPLEPPEVMDAMGEVFPSACPTKAALEANRATATLLIQQLAGGSQAGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSRNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEAKENAAATLFSLSAVHDYKKIIADEMRAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVSALGNEGVSEEAAGALALIVRQPIGAKAVVNEESAVAGLIGMMRCGTPRGKENAVAAMLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHATLHYGGLGVGYAFASNSNTTRDTSFAGDVSVPMSISVL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01997 716 Gene3D - 520 677 IPR011989 -
Gma13g01997 716 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Gma13g01997 716 Gene3D - 372 519 IPR011989 -
Gma13g01997 716 Coils Coil 215 235 - -
Gma13g01997 716 CDD RING-Ubox_PUB 295 337 IPR045210 -
Gma13g01997 716 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Gma13g01997 716 PANTHER U BOX DOMAIN-CONTAINING 12 698 - -
Gma13g01997 716 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Gma13g01997 716 SUPERFAMILY RING/U-box 279 364 - -
Gma13g01997 716 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 698 - -
Gma13g01997 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Gma13g01997 716 SMART arm_5 509 549 IPR000225 GO:0005515
Gma13g01997 716 SMART arm_5 424 464 IPR000225 GO:0005515
Gma13g01997 716 SMART arm_5 550 588 IPR000225 GO:0005515
Gma13g01997 716 Gene3D - 27 147 IPR036537 GO:0007166
Gma13g01997 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Gma13g01997 716 SUPERFAMILY ARM repeat 397 672 IPR016024 -
Gma13g01997 716 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01997 Gma-Chr13 35246788 35249540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01997 1 715 U-box Gene Family AT1G29340 70.096 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01997 - - gmx:100811153 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00813 15 6698931 6701731 Gma13g01997 13 35246788 35249540 GST
Gma05g01614 05 37913399 37916086 Gma13g01997 13 35246788 35249540 PCT
Gma08g01101 08 9347126 9350527 Gma13g01997 13 35246788 35249540 PCT
Gma13g01997 13 35246788 35249540 Gma05g01614 05 37913399 37916086 PCT
Gma13g01997 13 35246788 35249540 Gma08g01101 08 9347126 9350527 PCT