Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01995 ATGATGGAGGAAGCTCAGGGCAGTTCTAGTTCCCTGCCACCTTTCCTCACCAAGATTTATGAGATGGTGGATGATCCTTCAACTAATTCCATTGTTTCATGGAGTGCCACCAATAGGAGTTTCATTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAAATACTTTAAGCACAACAACTTTTCCAGTTTCATCAGGCAGCTCAACACTTACGGCTTTAGAAAGATTGATCCTGAacaatgggaatttgcaaatgatgattttgtaagaggtcagccacatctTTTGAAGAACATCCATAGGCGCAAACCTGTTCATAGCCATTCCTTGCAGAATATCCAGGGTCAAGGGGTTTCTTCGCTGACTGAATCAGAAAGGCAGAGTTTTAAGGATGAGATAGAGAAGCTTAAACATGAAAAAGAACAACTTCTTCGGGAGTTAGAGATGCATGAACAGGAGTGGAAAATGTATGAGGTACAATTACAACACTCCAATGATCGTTTGGAAAAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTCTCTCAAGTGTTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCTGTTGACAGAAAACATGGATAGAAAACGGAGGTTGCCAAGAAGTGGTCTCTTTAGTGATGACGCTAGCATTGAAGATCATATGGAAACTTCCCAAGTATTACCAAGGGAAAATGCAGATGGTGCTTCTATTTTCTCATCGAGCACAGAACGGTTGGATCTCCTTGAGTCATCCATGACGTTTTGGGAGAATATTACACATGATGTTGGTGACGTCTTTGTTCAAAGTCATTTAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGAAGTTGAAGATCAGCCTAAGTCACATGGAATCAACGTGAGTTCTGAGCCAGCTGTAGTTGCGGCTCCTGATCTTGATGCATCAAAAGAACAACCTGTCGAAACAGCTCCTCTGACTACTGGTGTTAATGACATATTCTGGGAACGATTCTTGACAGAGAATCCTGGTTCGTCAGAAATGCAGGAAGCTCAGTCTGAAAGAGAGGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1179 0.3995 MMEEAQGSSSSLPPFLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGVSSLTESERQSFKDEIEKLKHEKEQLLRELEMHEQEWKMYEVQLQHSNDRLEKLEKKQENLVSSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDASIEDHMETSQVLPRENADGASIFSSSTERLDLLESSMTFWENITHDVGDVFVQSHLNLDFDESTSCADSPAISCVQLEVEDQPKSHGINVSSEPAVVAAPDLDASKEQPVETAPLTTGVNDIFWERFLTENPGSSEMQEAQSEREDSDGRSNAKFWWNIRNVNNPPEQMGHS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01995 392 Coils Coil 121 190 - -
Gma13g01995 392 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Gma13g01995 392 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g01995 392 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g01995 392 MobiDBLite consensus disorder prediction 350 372 - -
Gma13g01995 392 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g01995 392 Gene3D - 7 105 IPR036388 -
Gma13g01995 392 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 373 - -
Gma13g01995 392 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g01995 392 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g01995 392 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g01995 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 373 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01995 Gma-Chr13 35225478 35226788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01995 8 391 HSF AT4G18880 52.393 4.94e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma13g01995 HSF_DNA-bind 1.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01995 K09419 - gmx:100820566 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00815 15 6717753 6719921 Gma13g01995 13 35225478 35226788 GST
Gma05g01616 05 37933853 37935181 Gma13g01995 13 35225478 35226788 PCT
Gma08g01103 08 9362657 9363987 Gma13g01995 13 35225478 35226788 PCT
Gma13g01995 13 35225478 35226788 Gma05g01616 05 37933853 37935181 PCT
Gma13g01995 13 35225478 35226788 Gma08g01103 08 9362657 9363987 PCT