Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01988 ATGTCTGTGGTGGCTGATAATTCTGCAAACAATGGAAGCCACCAAGTGGTTTTAAAtgtaaacggtgatgcccccaagaagtgtgatgactcagccaaccaagactgtgtacctcttctgcagaagTTGGTAGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAAAGTGGTAACACAACCTGGGATTTCAATTGTTTGGGGTCTCACTGTTATGGTTTTGGTTTACTCAGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTACCACCAAAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTCGTTGGAGCCACACTTGCTAGTGGAACTCTTAGACTTATATTCAATGGCAAGAATGACCATTTTGCAGGAACACTCCCTTCCGGTTCTGATTTGCAGTCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGTGTTGCCACCGATAACAGAGCGATTGGTGAGCTGGCAGGGCTTGCAGTTGGGTCTACGGTGCTGCTAAATGTGATGTTTGCCGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGTTTAGGGCCTGCTATTGTGCACCATGAATACAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCTGGTACATGGGCCTATAATTTCATCAGGTACACAAACAAGCCAGTGCGTGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGTAGTGAAGCTGAGTGA 822 0.4197 MSVVADNSANNGSHQVVLNVNGDAPKKCDDSANQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVVTQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHATTKRFPLKQVPAYVIAQVVGATLASGTLRLIFNGKNDHFAGTLPSGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSPTLGAVAGTWAYNFIRYTNKPVREITKSASFLKGSEAE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01988 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 Gene3D Glycerol uptake facilitator protein. 5 263 IPR023271 -
Gma13g01988 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Gma13g01988 273 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01988 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 270 - -
Gma13g01988 273 SUPERFAMILY Aquaporin-like 37 261 IPR023271 -
Gma13g01988 273 PANTHER AQUAPORIN NIP2-1 5 270 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01988 Gma-Chr13 35165009 35167514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01988 28 268 Major Intrinsic Protein MIP AT5G37820 59.200 1.17e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01988 K09874 - gmx:100812577 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01618 05 37954406 37958729 Gma13g01988 13 35165009 35167514 PCT
Gma08g01105 08 9382362 9385912 Gma13g01988 13 35165009 35167514 PCT
Gma13g01988 13 35165009 35167514 Gma05g01618 05 37954406 37958729 PCT
Gma13g01988 13 35165009 35167514 Gma08g01105 08 9382362 9385912 PCT