Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01980 atgtcataccTACCGCACCTACCACTGTTGCTGATGATGAGATTCAATGTTGGAGACACTCATTTGGGTGGTGTGGATTTTGATAACAGATTGGTGAACCATCTTGTGAATGTGTTTAGAGAGAAGCACAAGAAGGATATTAGTGGGAATGCGAAAGCTTTGGCGAGGTTAAGGTCGGAGTGCGAGAAAGCAAAGAGGATTCTGTCTTCGACTTCTCAGACAACGATTGAGCTTGATTGTTTATACGAAGGGCTTGATCTGTATGCCCCTGTTACAAGGGCCTTGTTCAACGAACTGAACAAGGACTTGTTCATGAAGTGTATGGATACAGTGGAAAAGTGTCTCCTTGAGGCAAGGATTGATAAGATCCAAGTTCATGAGATTATTCTTGTTGGTGGGTCCACTAGAATTCCAAAGGTACAACAACTTCTGAAGGACATGTTCAGTGTCAATGGTAACACCAAAGAGCTTTGCAAAGGCATCAACCCTGATGAAGCTGTGGCGTACGGTGCTGCAGTTCAAGCAGCGATTTTGAGCGGTGAAGGAGATAAAAAAGTGGAGGAATTGTTGTTGCTGGATGTGATGCCACTTAGTCTTGGATTTGAGGGTGCTGGTGGTGTTATGTCAGTGTTGATCCCCAAGAACACCATGATCCCCACCAAGAAGGAGAGGATTTGTTCTACCTTCTATGACAATCAGAAATCTTTTAATGTCAAAGTGTTCGAGGGAGAACGAGTTAAGACAAAGGATAACTTCTTTCTCGGCAAGTTTGTCCTCAAAGGGTTCGATCCATTACCAAAGGGAGTGCCACAAATCAACGTTATCTTTGATGTGGATGCTGATGGCATTGTGGAGGTCACCGCAGAAGATAAAGCCACAGGAATAGAAAAGAAGATCACAATCAACAACAAGCACGGAAGGCTGAACCCGGAAGAGATAAGAAGAATGGTGAGAGACTCAAAGAAGTACAAGGCAGAGGATGAGTTGGCAAAGAAGAAGGTGAAGGCGAAGAACGCACTAGAGAATTACGCTTATGAGATGAGGGAGAGAGCAAAGAAGATTGAAGAGGCAGTGGAGGAAACCATAGAGTGGCTAGAGTGTAACCAATTGGCAGAGATAGGGGAGTTTGATTACAAGAAGCAGGAGCTAGGAAGGTACCTAAGAGATGATCCAAATTATAGTAACACCTCAAATTCTGGTGTTAAGGTTCCTATATGGTGTACATGGAGGTGTCCACCTAATGGGTGGGTTTGTCTCAACACAGATGGTTCGGTGTTTGAGAACCATAGAAACGGGTGTAGTGGGAGTGCTTGTGGGGGTCTAGTTCGTGATTCCTCGGGATGTTACCTAGGTGGTTTCACAGTTAACTTAGGCAACACATCG 1383 0.4418 MSYLPHLPLLLMMRFNVGDTHLGGVDFDNRLVNHLVNVFREKHKKDISGNAKALARLRSECEKAKRILSSTSQTTIELDCLYEGLDLYAPVTRALFNELNKDLFMKCMDTVEKCLLEARIDKIQVHEIILVGGSTRIPKVQQLLKDMFSVNGNTKELCKGINPDEAVAYGAAVQAAILSGEGDKKVEELLLLDVMPLSLGFEGAGGVMSVLIPKNTMIPTKKERICSTFYDNQKSFNVKVFEGERVKTKDNFFLGKFVLKGFDPLPKGVPQINVIFDVDADGIVEVTAEDKATGIEKKITINNKHGRLNPEEIRRMVRDSKKYKAEDELAKKKVKAKNALENYAYEMRERAKKIEEAVEETIEWLECNQLAEIGEFDYKKQELGRYLRDDPNYSNTSNSGVKVPIWCTWRCPPNGWVCLNTDGSVFENHRNGCSGSACGGLVRDSSGCYLGGFTVNLGNTS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01980 461 Gene3D Actin; Chain A, domain 4 24 106 - -
Gma13g01980 461 Gene3D - 17 158 - -
Gma13g01980 461 PANTHER HEAT SHOCK PROTEIN 70KDA 10 381 IPR013126 GO:0005524|GO:0140662
Gma13g01980 461 ProSitePatterns Heat shock hsp70 proteins family signature 3. 128 142 IPR018181 -
Gma13g01980 461 PRINTS 70kDa heat shock protein signature 188 207 - -
Gma13g01980 461 PRINTS 70kDa heat shock protein signature 125 141 - -
Gma13g01980 461 PRINTS 70kDa heat shock protein signature 269 285 - -
Gma13g01980 461 Gene3D - 338 389 IPR029048 -
Gma13g01980 461 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 336 385 IPR029048 -
Gma13g01980 461 Gene3D - 159 176 - -
Gma13g01980 461 SUPERFAMILY Actin-like ATPase domain 16 178 IPR043129 -
Gma13g01980 461 Pfam Hsp70 protein 17 366 IPR013126 GO:0005524|GO:0140662
Gma13g01980 461 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 10 381 - -
Gma13g01980 461 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 183 337 IPR029047 -
Gma13g01980 461 Coils Coil 54 74 - -
Gma13g01980 461 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 185 341 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01980 Gma-Chr13 35090916 35093688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01980 13 383 Calmodulin-binding Proteins AT1G16030 63.377 1.24e-174 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01980 K03283 - gmx:100795699 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00829 15 6816654 6818661 Gma13g01980 13 35090916 35093688 GST