Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01979 ATGGCACCCGGAAATGTCAAAGCTATAGGCATTGACTTGGGAACAACCTATAGCTGCGTGGCAGTGTGGCAACACAACCACGTCGAGGTCATTCCCAATGACCAAGGCAACCGCACAACCCCTTCCTACGTTGCCTTCACCGACACCCAAAGGTTGTTGGGTGACGCTGCCATCAACCAGCGATCCATGAACCCACAAAACACCGTCTTTGACGCCAAACGTTTGATAGGTCGCAGATTCTCCGACCAATCCGTCCAGCAAGACATGAAGCTCTGGCCTTTTAAGGTTGTCCCTGGAAACAGAGACAAGCCCATGATTTCTGTCACATACAAAGACGAAGAGAAACTCCTTGCAGCCGAAGAGATATCTTCCATGGTGCTGTTTAAGATGAAGGAGGTTGCTGAAGCCCATTTGGGTCATTTCATAAAAGATGCGGTGATCACTGTCCCTGCTTACTTCAGCAACGCGCAGAGACAAGCCACCAAGGATGCCGGGAAAATCGCGGGTTTGAACGTGTTGAGGATCATCAACGAGCCAACCGCAGCTGCTATTGCTTATGGTTTGAACAAGAAAGGGTGGAGAGAAGGTGAGCAGAACGTGCTTGTGTTTGACCTCGGTGGTGGTACTTTTGATGTTTCATTGGTTACAATTGATGAAGGAATGTTTAAGGTTAAGGCCACGGTGGGAGATACCCATTTGGGAGGTGTTGACTTTGATAACAAAATGGTTGACTATCTTGTGAGTATTTTCAAGAGGAGGTACAAGAAGGACATTGGTGAAAATCCCAAAGCTCTTGGAAGGTTGAGGTCAGCGTGTGAGAAAGCTAAGAGGATACTCTCTTCAAGTTCTCAAACCACTATTGAGCTTGATTCTTTATGTGGGGGGGTTGATTTACATGCAAATTTTTCAAGGGCCTTGTTCGAGGAATTGAACAAGGACTTGTTCATGAAGTGTATGGAGACGGTGGAGAAGTGCCTCAAGGAGGCAAGGATTGCTAAAAGTCAAGTTCATGAGTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGGTGCAGCAACTTTTGAAGGACATGTTCAGTGTTAATGGTAACAAGGAGCTTTGCAAAAGCATCAACCCTGATGAGGCCGTGGCGTATGGTGCGGCGGTTCAGGCGGCGATTTTGAGTGGCGAAGGAGACAAGAAGGTGGAGGATTTGTTGCTGCTGGATGTGATGCCGCTTAGTCTTGGAATTGAGACTGATGGTGGTGAGATGTCAGTGTTGATTCCCAAGAACACCATGATCCCCACCAAGAGGGAGAGTGTTTTCTCCACGTTTTCTGATAATCAAACAAGCGTTTTGATCAAAGTTTTCGAAGGGGAGCGAGCGAAGACAGAGGATAACTTCCTTCTTGGGAAGTTTGAGCTTTCTGGTTTCACTCCATCGCCAAGGGGAGTTCCACAGATCAATGTTGGGTTTGATGTTGATGTTGATGGCATTGTGGAAGTCACTGCTAGAGATAGGAGCACGGGGCTGAAGAAGAAGATCACGATCAGCAACAAGCATGGGAGGTTGAGTCCTGAAGAGATGAGGAGAATGGTGAGAGATGCAGTGAGGTATAAGGCAGAGGATGAGGAGGTGAGGAACAAGGTGAGGATAAAAAACTTGCTTGAGAATTATGCTTTTGAAATGAGGGACAGAGTGAAGAACCTTGAGAAGGTTGTGGAGGAGACCATAGAATGGCTTGACAGAAACCAATTGGCTGAAACTGATGAGTTTGAGTACAAGAGGCAGGAGTTGGAAGAAAAGGTTTTGAAGTTTATGTAA 1806 0.4657 MAPGNVKAIGIDLGTTYSCVAVWQHNHVEVIPNDQGNRTTPSYVAFTDTQRLLGDAAINQRSMNPQNTVFDAKRLIGRRFSDQSVQQDMKLWPFKVVPGNRDKPMISVTYKDEEKLLAAEEISSMVLFKMKEVAEAHLGHFIKDAVITVPAYFSNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLNKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGVDFDNKMVDYLVSIFKRRYKKDIGENPKALGRLRSACEKAKRILSSSSQTTIELDSLCGGVDLHANFSRALFEELNKDLFMKCMETVEKCLKEARIAKSQVHEFVLVGGSTRIPKVQQLLKDMFSVNGNKELCKSINPDEAVAYGAAVQAAILSGEGDKKVEDLLLLDVMPLSLGIETDGGEMSVLIPKNTMIPTKRESVFSTFSDNQTSVLIKVFEGERAKTEDNFLLGKFELSGFTPSPRGVPQINVGFDVDVDGIVEVTARDRSTGLKKKITISNKHGRLSPEEMRRMVRDAVRYKAEDEEVRNKVRIKNLLENYAFEMRDRVKNLEKVVEETIEWLDRNQLAETDEFEYKRQELEEKVLKFM 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01979 601 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 5 595 - -
Gma13g01979 601 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 551 IPR029047 -
Gma13g01979 601 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Gma13g01979 601 Gene3D - 70 125 - -
Gma13g01979 601 Pfam Hsp70 protein 8 600 IPR013126 GO:0005524|GO:0140662
Gma13g01979 601 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Gma13g01979 601 PANTHER HEAT SHOCK PROTEIN 70KDA 5 595 IPR013126 GO:0005524|GO:0140662
Gma13g01979 601 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 547 IPR029047 -
Gma13g01979 601 Gene3D - 191 368 - -
Gma13g01979 601 SUPERFAMILY Actin-like ATPase domain 8 190 IPR043129 -
Gma13g01979 601 Gene3D - 548 601 IPR029048 -
Gma13g01979 601 Gene3D Actin; Chain A, domain 4 234 317 - -
Gma13g01979 601 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Gma13g01979 601 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 547 597 IPR029048 -
Gma13g01979 601 Gene3D - 9 386 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 7 20 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 35 47 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 57 65 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 145 165 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 208 218 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 371 391 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 398 417 - -
Gma13g01979 601 PRINTS 70kDa heat shock protein signature 479 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01979 Gma-Chr13 35085579 35087384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01979 1 594 Calmodulin-binding Proteins AT1G16030 68.092 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01979 K03283 - gmx:121173324 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00831 15 6824047 6826166 Gma13g01979 13 35085579 35087384 GST