Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01972 ATGGAATCGAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCGTCGCTGGCCCCAGAACGCCATAACAAAGAAGCAGAGCTCCAAAACGATGGAGAAGTTGTTGATCAGGGTGTGAGGTTGATGTATTCGGCATTCGAAGGCGATGTAGATGGAATTTGTGAGGCGTTGGAGTTTGGTGTGAGTGTGAATTACAAGGATATTGATAATCGCACTGCTCTTCATGTCGCAGTGTGTGAGGGATTCACTGATGTTGTTGATTTGTTGCTCCAGAAAGGTGCCGAAGTTGACCCCAAAGATCGATGGGGGAGCACGCCTCTTGCAGATGCTATTTTTTACAAAAAGAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCTTCTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAGTATGAAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACAAAGGGGACTTTCTGTATTGCACTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGGGAGATCTTCGTGATTTCTTGAAAAGAAAAGGAGCTTTGAAACCATCGACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCACGATACTTCCTGCCGCTATGTGGCTCCTGAAGTTTTCAGACAAGAATATGACACTAAAGTGGATGTATTTTCATTTGCACTAATTCTGCAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCAAGACAATGAAGTTCCTAAGGTATATGCTGCAAAAGAGCGTCCACCTTTCCGAGCTCCAGCCAAGCATTACTCCTATGGAATTCGAGAATTGATTGAAGAGTGCTGGAATGAAAATCCAGTAAAGAGGCCAACATTTAGGCAAATAATAACAAGGCTGGAGTCCATCTACAACACAATTAGTCACAAAAGACATTGGAAGGTTAGGCCATTGAAATGCTTTCAAAATCTGGAGCAACCAAATTTGACTTCTAGAGTTGGAGCTTTTGCAACATTTTCTCGTGTGTATTCATTCACAGGCACTATGACCAATGACCTCACCAAATTAAACTTAGGGCTAGCTGCAGCCACATGGGAATAG 1419 0.4383 MESKNPARFTLGKQSSLAPERHNKEAELQNDGEVVDQGVRLMYSAFEGDVDGICEALEFGVSVNYKDIDNRTALHVAVCEGFTDVVDLLLQKGAEVDPKDRWGSTPLADAIFYKKNDVIKLLEKHGAKLLMAPMHVNHAREVPEYEINPKELDFTNSVEITKGTFCIALWRGTEVAVKKLGEDVISDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCHDTSCRYVAPEVFRQEYDTKVDVFSFALILQEMIEGCPPFSAKQDNEVPKVYAAKERPPFRAPAKHYSYGIRELIEECWNENPVKRPTFRQIITRLESIYNTISHKRHWKVRPLKCFQNLEQPNLTSRVGAFATFSRVYSFTGTMTNDLTKLNLGLAAATWE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01972 472 Pfam Protein tyrosine and serine/threonine kinase 172 406 IPR001245 GO:0004672|GO:0006468
Gma13g01972 472 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Gma13g01972 472 MobiDBLite consensus disorder prediction 1 30 - -
Gma13g01972 472 SUPERFAMILY Protein kinase-like (PK-like) 158 407 IPR011009 -
Gma13g01972 472 PRINTS Tyrosine kinase catalytic domain signature 265 283 IPR001245 GO:0004672|GO:0006468
Gma13g01972 472 PRINTS Tyrosine kinase catalytic domain signature 226 239 IPR001245 GO:0004672|GO:0006468
Gma13g01972 472 PRINTS Tyrosine kinase catalytic domain signature 377 399 IPR001245 GO:0004672|GO:0006468
Gma13g01972 472 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Gma13g01972 472 SUPERFAMILY Ankyrin repeat 40 130 IPR036770 -
Gma13g01972 472 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 437 - -
Gma13g01972 472 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Gma13g01972 472 CDD STKc_MAP3K-like 160 406 - -
Gma13g01972 472 PIRSF ILK 1 429 - -
Gma13g01972 472 ProSiteProfiles Protein kinase domain profile. 119 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01972 472 Gene3D - 34 138 IPR036770 -
Gma13g01972 472 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 437 - -
Gma13g01972 472 SMART ANK_2a 69 98 IPR002110 GO:0005515
Gma13g01972 472 SMART ANK_2a 102 131 IPR002110 GO:0005515
Gma13g01972 472 SMART ANK_2a 36 65 IPR002110 GO:0005515
Gma13g01972 472 Gene3D Transferase(Phosphotransferase) domain 1 139 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01972 Gma-Chr13 35039127 35051898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01972 8 427 MAP Kinase Kinase Kinase AT4G18950 69.014 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Gma13g01972 PK_Tyr_Ser-Thr 3.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01972 - - gmx:100806334 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00836 15 6865770 6872079 Gma13g01972 13 35039127 35051898 GST