Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01971 ATGGCTTTTCCAGACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACTACCAATCGCCAAGTCACATTCTGCAAGCGCAGGAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTCATTGTTTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACCATCGAGAGGTACAAAAAAGCAAGTTCAGATTCGTCTGGCGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTCAACAAATTAGTAACCTGCAGAATAACAACAGGCAATTAAATTGCAGGCAAATGATGGGTGATTCTTTGGGCTCTCTGACTGCCAAGGATCTCAAAAATCTGGAGACTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAAAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAACCACCATAACATGGCTGTGTTGCCTGGAGGCTCAAACTATGACTCTATGCAGTCTTCTCAGCAACAATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCACGGCAAGATCAGATGTCCCTTCAATTAGTATGA 747 0.4311 MAFPDPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKASSDSSGAGSASEANAQFYQQEADKLRQQISNLQNNNRQLNCRQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNMAVLPGGSNYDSMQSSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01971 248 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Gma13g01971 248 Gene3D - 28 111 IPR036879 GO:0003677|GO:0046983
Gma13g01971 248 PANTHER MADS BOX PROTEIN 10 242 - -
Gma13g01971 248 Coils Coil 102 129 - -
Gma13g01971 248 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Gma13g01971 248 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Gma13g01971 248 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Gma13g01971 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Gma13g01971 248 Coils Coil 144 164 - -
Gma13g01971 248 Pfam K-box region 99 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma13g01971 248 ProSiteProfiles K-box domain profile. 102 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma13g01971 248 PANTHER AGAMOUSB 10 242 - -
Gma13g01971 248 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Gma13g01971 248 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Gma13g01971 248 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Gma13g01971 248 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01971 Gma-Chr13 35010181 35018995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01971 14 248 MADS-box Gene Family AT3G58780 65.833 2.38e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma13g01971 K-box 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01971 K09264 - gmx:732595 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00837 15 6892176 6902726 Gma13g01971 13 35010181 35018995 GST
Gma05g01627 05 38020829 38028261 Gma13g01971 13 35010181 35018995 PCT
Gma08g01112 08 9430117 9437088 Gma13g01971 13 35010181 35018995 PCT
Gma13g01971 13 35010181 35018995 Gma05g01627 05 38020829 38028261 PCT
Gma13g01971 13 35010181 35018995 Gma08g01112 08 9430117 9437088 PCT