Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01960 ATGGCACAAGATGAAGAAGCTGCCAAGGTCAAAGTCGAAGAAAAGGTTCCATTTTACAAGCTTTTCACCTTTGCAGACCACCTTGACATGACTATGATGATCATTGGTGTCATCAGTGCCATGGCTAATGGGATGTCGCAACCTCTCATGTCCCTCATTTTTGGGAAGATGATCAACGCATTTGGCTCCACTGATCCCTCCCACATTGTCCAGGAAGTTTCTAAGGTTGCATTGTTATTTGTTTACGTGGCTTTTGGAGCTGGAATTACCTCTTTTCTACAGGTATCATGTTGGATGATGACAGGAGAAAGACAAGCAGCAAGGATCCGTGGCTTGTACTTGAAAACTATATTGAAGCAGGACATTACCTTCTTTGACACTGAAACAACAACTGGTGAGGTAATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGTTTCAGCATTTTTTGGTGGCTTTGTCATAGCCTTTACAAAAGGATGGGAACTCTGTCTAGTTTTGCTTGCATGCATTCCTTGCATTGTTGTTGTTGGTGGAATCATGTCCATGATGATGGCAAAAATGTCAACTCGCGGGCAAGCTGCTTATGCAGAAGCTGGAATTGTTGTAGAACAAACAGTTGGAGCCATTAGAACAGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAGAAATATAATAACAAGTTAAGAATTGCTTATGCTACAACTGTTCAACAAGGGTTGGCCTCAGGGTTTGGAATGGGAGTACTCTTGTTGATTATTTTTTGCACCTATGCACTTGCCATGTGGTATGGTTCCAAACTGATCATTGAGAAAGGCTATGATGGTGGAAGTGTCTTCAACATTATCATGTCAATCAATACTGGTGGAATGTCACTTGGTCAGGCAGCTCCGTGCGTAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCTTGGAAGAAATAAGGGGAGATATAGAACTCAAGGATGTTCACTTCAGATACCCTGCAAGGCCAGATGTTCAGATCTTTTCCGGATTCTCATTCTATATTCCAAGTGGAAAAACTGCTGCTTTTGTGGGTCAAAGTGGAAGCGGGAAGTCCACTATAATTAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTATCCTGTTTACAGCTAGTATTAAAGAGAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCAATAACACTTGCTAATGCCAAAAAGTTCATTGATAAGCTGCCTCAGGGAATTGACACAATGGTTGGAGGGCATGGAACTCAACTTTCTGGTGGGCAAAAACAAAGAATAGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCTACTAGTGCATTGGATGCTGAGTCTGAACGTATTGTCCAAGAAGCATTAGAAAAAGTTATGTCACAAAGGACTACTGTAGTTGTTGCACATCGTTTAACAACTATTAGAAATGCTGACATAATAGCAGTGATTCATCAGGGAAAAATTGTAGAAAAAGGAACTCATGATGAATTGATCAAGGATGCTGATGGTTCTTATTCTCAGCTTATTCGTTTACAAGAAGGAAATAAAGGAGCAGATGTGAGCCGAAAATCAGAAGCAGATAAGTCAAATAACAACAGCTTCAACTTAGATAGTCACATGGCTAGATCTTTAACTAAGAGAACATCCTTTGCAAGATCAATAAGTCAAGGCTCAACAAGCAGTAGACACTCTCTCTCACTTGGCTTAGCTCTTCCTTATCAAATTCCTTTGCATAAGTCTGGAGAAGGAGATAATGAGGATGTTGAAAGTAGTGAAGTTGATAATAAGAAGAACCAAAAGGTTCCCATTAACCGTTTGGCCAAGCTGAACAAGCCAGAGGTTCCTGTCTTATTACTAGGATCCATTGCTGCAGCAATACATGGTGCTATTCTCCCTATATTTGGACTCTTGCTTTCATCAGCAATTAACACGTTCTATAAACCTCCAAATGAGCTCAGGAAAGATTCTGAGTTTTGGTCACTTTTATTTGTTGGTTTGGGGGTTGTCACTTTGGTGGCTATACCAGTGCAAAACTACTTATTTGGGATAGCTGGTGGAAAACTTATAGAACGAATTTGTTCGTTGACATTTAACAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCGTCCTTCAAATTCAAGTGGGGCAGTTAGTGCAAGGTTAGCTACTGGAGCTTCAACAGTGAGAAGCCTCGTGGGTGACACCTTGGCCCTCATTGTGCAAAACATAGCAACAGTCTCAGCAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCCGTGTCACCCTTGTTGCTTATACAAGGATACCTTCAGACCAAGTTTGTAAAAGGATTCAGTGCAGATGCAAAGGTGATGTATGAGGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGATGGAAATGTACAGGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCTTTTGTTGTTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTATTCTTGTGCAACATGGGAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAATTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAGGCCAAAGATTCTGCAGCCTCAATATTTGAAATTCTTGACAGCAAACCAGCTATTGACTCCAGCAGTGATGAGGGCACAACATTAGACACAGTAAAAGGTGAAATTGAACTTCAACAAGTCAGCTTTTGTTACCCAACAAGGCCTAATATTCAAATTTTCAAAGACATGTGTCTAACCATGCCAACTGGAAAGACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATGGAGTGGATATAAAAGAATTCAAACTAAACTGGCTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGATAGCATTCGTGCCAACATAGCTTATAGCAAAGAGGGAGGTGCCACAGAGGAAGAGATAATTGCAGCAGCACAAGCAGCCAATGCACACAAGTTCATCAGTTCTCTTCCACATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCAAGAATCCTTTTGCTTGATGAGGCAACTAGTGCACTTGATGCAGAATCAGAAGGTGTGGTTCAAGAGGCTCTTGATAGAGTGTCTGTGAATAGAACTACTGTCGTTATTGCTCACCGCCTCACAACAATTAAAGGTGCTGACATTATAGCAGTGGTGAAAAATGGGGCGATTGCTGAGAAGGGAGGACATGATGCGTTGATGAAGATTGATGGTGGAGTTTATGCTTCTTTGGTAGCTCTCCATACGAAGTGA 3786 0.4147 MAQDEEAAKVKVEEKVPFYKLFTFADHLDMTMMIIGVISAMANGMSQPLMSLIFGKMINAFGSTDPSHIVQEVSKVALLFVYVAFGAGITSFLQVSCWMMTGERQAARIRGLYLKTILKQDITFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLVSAFFGGFVIAFTKGWELCLVLLACIPCIVVVGGIMSMMMAKMSTRGQAAYAEAGIVVEQTVGAIRTVASFTGEKKAIEKYNNKLRIAYATTVQQGLASGFGMGVLLLIIFCTYALAMWYGSKLIIEKGYDGGSVFNIIMSINTGGMSLGQAAPCVNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEEIRGDIELKDVHFRYPARPDVQIFSGFSFYIPSGKTAAFVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPILFTASIKENIAYGKEGATDEEITTAITLANAKKFIDKLPQGIDTMVGGHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMSQRTTVVVAHRLTTIRNADIIAVIHQGKIVEKGTHDELIKDADGSYSQLIRLQEGNKGADVSRKSEADKSNNNSFNLDSHMARSLTKRTSFARSISQGSTSSRHSLSLGLALPYQIPLHKSGEGDNEDVESSEVDNKKNQKVPINRLAKLNKPEVPVLLLGSIAAAIHGAILPIFGLLLSSAINTFYKPPNELRKDSEFWSLLFVGLGVVTLVAIPVQNYLFGIAGGKLIERICSLTFNKVVHQEISWFDRPSNSSGAVSARLATGASTVRSLVGDTLALIVQNIATVSAGLVIAFTANWILAFVILAVSPLLLIQGYLQTKFVKGFSADAKVMYEEASQVATDAVGSIRTVASFCAEPKVMEMYRKKCSGPEKQGVRLGLVSGAGLGFSFVVLYCTNAFCFYIGSILVQHGKATFGEVFKVFFALTITAVGVSQSSALAPDTNKAKDSAASIFEILDSKPAIDSSSDEGTTLDTVKGEIELQQVSFCYPTRPNIQIFKDMCLTMPTGKTVALVGESGSGKSTVISLLERFYNPDSGRILIDGVDIKEFKLNWLRQQMGLVGQEPILFNDSIRANIAYSKEGGATEEEIIAAAQAANAHKFISSLPHGYDTSVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEGVVQEALDRVSVNRTTVVIAHRLTTIKGADIIAVVKNGAIAEKGGHDALMKIDGGVYASLVALHTK 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01960 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 591 IPR003439 GO:0005524
Gma13g01960 1261 SMART AAA_5 1047 1234 IPR003593 -
Gma13g01960 1261 SMART AAA_5 382 568 IPR003593 -
Gma13g01960 1261 Pfam ABC transporter 1039 1188 IPR003439 GO:0005524
Gma13g01960 1261 Pfam ABC transporter 375 522 IPR003439 GO:0005524
Gma13g01960 1261 CDD ABC_MTABC3_MDL1_MDL2 1020 1256 - -
Gma13g01960 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01960 1261 Gene3D - 1010 1261 IPR027417 -
Gma13g01960 1261 MobiDBLite consensus disorder prediction 595 615 - -
Gma13g01960 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 316 - -
Gma13g01960 1261 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524
Gma13g01960 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 593 IPR027417 -
Gma13g01960 1261 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1260 IPR039421 -
Gma13g01960 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Gma13g01960 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01960 1261 SUPERFAMILY ABC transporter transmembrane region 20 339 IPR036640 GO:0005524|GO:0016021
Gma13g01960 1261 CDD ABC_MTABC3_MDL1_MDL2 355 593 - -
Gma13g01960 1261 SUPERFAMILY ABC transporter transmembrane region 681 1004 IPR036640 GO:0005524|GO:0016021
Gma13g01960 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1003 - -
Gma13g01960 1261 Gene3D - 353 606 IPR027417 -
Gma13g01960 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1257 IPR027417 -
Gma13g01960 1261 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524
Gma13g01960 1261 Pfam ABC transporter transmembrane region 33 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01960 1261 Pfam ABC transporter transmembrane region 699 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01960 1261 Gene3D ABC transporter type 1, transmembrane domain 79 994 IPR036640 GO:0005524|GO:0016021
Gma13g01960 1261 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 11 1260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01960 Gma-Chr13 34889981 34895564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01960 5 1259 Calmodulin-binding Proteins AT2G36910 44.611 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01960 K05658 - gmx:100792531 2385.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01960 13 34889981 34895564 Gma13g01960 13 34889981 34895564 ECH