Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01954 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAATCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCGACCAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGCGGAGACTGATGAAGTGTACGCGCAAATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTGCCAGCGGAGCTGGGCACCCCAAGTAAACAGCCAACAAACTATTTCTGCAAAACTTTGACAGCCAGTGACACAAGCACACATGGGGGATTCTCTGTGCCTCGCAGGGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAACCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGGCATATCTTCCGGGgccagcccaaaaggcatctacttacaaccggatggagtgtctttgtgagtgctaaaagactagtTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTACTACTTGGCATCCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCTTCGGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATCTTCTATAATCCACGTGCTAGCCCTTCAGAATTTGTCATACCATTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGCGGAGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGCAAAACTCACATTGGCGCTCCGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGACAGGCAACCTAGAGTGTCTCTTTGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGGCCATGGCCTCCAGGACTGCCTTCATTCCATGGCATGAAGGATGACGATTTTGGCCCGAATTCACCTCTGTTGTGGCTCCGAGATCCTGATAGAGGGCTTCCGTCTCTTAATTTTCAGGGGATTGGGATTAATCCTTGGATGCAGCCAAGATTTGATCCCACCATGTTGAATATGCAAACAGACATGTACCAAGCTGCGGCTGTTCAGGACATGAGGAGTTTAGATCCTTCCAAACAGCATTCTGCTTCCTTACTTCCATTTCAGCAACCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCACAACCTCAGCAGATTTTTGGAAATACTCAAGAGAATCAACATTCCCCACAATCTCAGGCTCATCTTCAGCAACATCTACAACATCAACACTCGTTCAATAGTCAGCATCATCATCACCACCAGCAACAACAACAGCGACAGCAACATCAAGTGGTAGATAATCAACAGATTtctagtgcagtctctacaatgtctcagtttgtttcagctcctcaaccTCAATCACCACCTATGCAAGCTATCTCTTCCATGTGCCAACAGCAAAACTTTTCTGATTCAAACGGGAACACTGTGACTACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCTTTTCCCCAGGATGAAACATCTCACCTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAAGTGGGTGGCCCTCGAAGCGTGTGGCAGTGGATCCTCTCCTTTCTTCCGGAGCCTCTCAATGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCACAGAGTACCATGTCTCAAAATGCTATTTCTTTACCACCTTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCTTATTTGGTGTTAATATAGAGCCCTCGTCCCTTCTCATGCCTAATGGAATGTCAAGCCTTAAGGGGGTCTGTGGAAACAATGGCTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACTACCACACGGACTGATTCTTCATTGAATCATGGAATGACCCCCAACATAGGCGACTCGGGTTTCCTGCAGTGTCTGGAAGAGGCAGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTGGTGAACTCGCTCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGCGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAGATGGGCAACAATGGCCTTGAGCTGTTGAACTCGTTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAGGCACTGGGATAACAACCGTGGGGTCTTTAGACTACTAA 2688 0.4487 MRLSSAGFSPPPQEGENRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGPNSPLLWLRDPDRGLPSLNFQGIGINPWMQPRFDPTMLNMQTDMYQAAAVQDMRSLDPSKQHSASLLPFQQPQNFPNRTAALMQAQMLQQSQPQQIFGNTQENQHSPQSQAHLQQHLQHQHSFNSQHHHHHQQQQQRQQHQVVDNQQISSAVSTMSQFVSAPQPQSPPMQAISSMCQQQNFSDSNGNTVTTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSSGWPSKRVAVDPLLSSGASQCVLPQVEQLGQPQSTMSQNAISLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPSSLLMPNGMSSLKGVCGNNGSSTLPYQSSNYLNTTTRTDSSLNHGMTPNIGDSGFLQCLEEAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSFPIQRLSNGICDDYVSRQDPRNLGTGITTVGSLDY 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01954 895 MobiDBLite consensus disorder prediction 492 514 - -
Gma13g01954 895 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Gma13g01954 895 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gma13g01954 895 ProSiteProfiles PB1 domain profile. 762 846 IPR000270 GO:0005515
Gma13g01954 895 Gene3D - 759 851 - -
Gma13g01954 895 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 875 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g01954 895 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Gma13g01954 895 Gene3D - 291 363 - -
Gma13g01954 895 Gene3D - 125 228 IPR015300 -
Gma13g01954 895 PANTHER AUXIN RESPONSE FACTOR 1 875 - -
Gma13g01954 895 MobiDBLite consensus disorder prediction 492 538 - -
Gma13g01954 895 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gma13g01954 895 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma13g01954 895 Pfam AUX/IAA family 759 847 IPR033389 -
Gma13g01954 895 SUPERFAMILY CAD & PB1 domains 762 837 - -
Gma13g01954 895 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01954 Gma-Chr13 34852900 34859596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01954 1 480 B3 DNA Binding Superfamily AT1G30330 85.451 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma13g01954 AUX_IAA 2.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01954 - - gmx:100798719 1713.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01954 13 34852900 34859596 Gma13g01954 13 34852900 34859596 ECH