Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01940 ATGGAGGAGGATGAGATTCAAGCATGTAAGTTCCCAAGAGTTGGAAATGGTAGGAGTAGTGACCAATACCAAGAGGAGGAAGAAGAGGGTGGTGACCTAAGACTTAGAAAAGGTGTTGGTGTTGGTGGTGGTGGTGGAGGTGGAGGAAGTGATGCTAGCACAAACCACTTCCACCAAAGTAGTTGGCACCATTCTTCTAGAATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACCTCAAAAGGGTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTACGACCAACCTAGCAAAGCTGTTGAGTGGTTAATCAAAGCTGCTTCAGAAGCTATCTCTGAGCTTCCTTCTCTCAACAACCCTTTCCCTGATACCCCTAAGCAACTAAGTGATAAGAAAAGGCCTACTAGTGGTGGTGGTCAACAACAACAACAAATACAACAAGGCCACTTTGATGATGCTGATGGAGACACAAGTTACCCCCAAAACCAAAGCCAGAACCTTTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGCTCAGGCTTGTCCCTCTCAAGGTCTGAGATTCGTGTGAACCGTGTTAAGGCAAGGGAGAGGGCTAGGGAGAGAGCTGCTAAAGAAAAAgagaaggagaaggagaaggagaaggagaaggagaaagagaGTGAATCTAGCATTGCACATCACCACCATCATCACCATGTGAACAACAACAACCACATGTCTCACACAGCTTCCTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACTGTAACAGTTAACCCCAACACCACCACCACCACCACCACAACAACAACAAGTCCTAATGGGTCATCAGTTCATCAGATCCATGATGGTCATGATCATGAGACTAATCTATTCAACAAGGGAAGGCAACAACAACAACAGCATCATTGGTCTCAAACAGTGACACCTATGGACTACTTCAGCACAGGCCTCTTGGTAGGACCTTCTTCATCATCTGCAAGAACTCAACAACACCAACACCAATCTTCTTCAGCACATTTCCAACTGGGACATGCACATGCCCTTCCAATCTCTCCATTCAGTGGAGAAAACCACTCAGAGCAGCTGCAGCATTTTTCCTTCATGCCAGACCACCTCAACAACATACCAGCTCATCATGTGGTTACATCTTCTTCTGCTTCTCATCAACCCAACGGGGGTGACAACAACTACAACCTCAACTTCAGTATCTCTACATCGACGGGCCTTGCTGGTTACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTCCTCGTTTTTGCCTCATCACCTCCAGAGGTTTCAACCTTTAGACGGATCGTCCAACCTACCTTTCTTTATAGGAGCTGCTGCTCCTTCTTCTGCTCCTCCAACCATGGACAACAACAACAATAATAACAGCAACAACCATCACCACCTTCATTCCCCCGAGGAACACCACTTTTCTTCCTGGAATTTTGTTCTGTGTTTTTGTAGGAGCAACAAGCTGTGTCCCCTTCCCTTCTGCAAAATGGAGGATAAGTTGTTGTCATCAAGTGTTGGTGTTTCTTCTTGGATCATTTAG 1653 0.4561 MEEDEIQACKFPRVGNGRSSDQYQEEEEEGGDLRLRKGVGVGGGGGGGGSDASTNHFHQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLNNPFPDTPKQLSDKKRPTSGGGQQQQQIQQGHFDDADGDTSYPQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKEKEKEKEKEKEKESESSIAHHHHHHHVNNNNHMSHTASFTELLTGGIGSTVTVNPNTTTTTTTTTTSPNGSSVHQIHDGHDHETNLFNKGRQQQQQHHWSQTVTPMDYFSTGLLVGPSSSSARTQQHQHQSSSAHFQLGHAHALPISPFSGENHSEQLQHFSFMPDHLNNIPAHHVVTSSSASHQPNGGDNNYNLNFSISTSTGLAGYNNRGTLQSNSPSSSFLPHHLQRFQPLDGSSNLPFFIGAAAPSSAPPTMDNNNNNNSNNHHHLHSPEEHHFSSWNFVLCFCRSNKLCPLPFCKMEDKLLSSSVGVSSWII 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01940 550 MobiDBLite consensus disorder prediction 135 212 - -
Gma13g01940 550 ProSiteProfiles TCP domain profile. 77 135 IPR017887 -
Gma13g01940 550 Pfam TCP family transcription factor 76 235 IPR017887 -
Gma13g01940 550 ProSiteProfiles R domain profile. 215 233 IPR017888 -
Gma13g01940 550 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 506 IPR005333 GO:0003700
Gma13g01940 550 MobiDBLite consensus disorder prediction 1 50 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 283 307 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 20 35 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 215 253 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 484 505 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 135 265 - -
Gma13g01940 550 PANTHER TRANSCRIPTION FACTOR TCP24 1 506 - -
Gma13g01940 550 Coils Coil 219 250 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 349 368 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 485 500 - -
Gma13g01940 550 MobiDBLite consensus disorder prediction 283 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01940 Gma-Chr13 34680699 34689450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01940 60 504 TCP Transcription Factor Family AT4G18390 41.164 6.60e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma13g01940 TCP 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01940 - - gmx:100787772 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01940 13 34680699 34689450 Gma13g01940 13 34680699 34689450 ECH
Gma15g00874 15 7228011 7238918 Gma13g01940 13 34680699 34689450 GST