Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01907 ATGCATAATGGATGTCTCTTAATTTGGGCAGTGACATCAGGACCTACTTTTTACCTGTGCACCACTTCAGCCGGTTTTTCAGCCACAGTCAACGACCCATCTCCACTGCCAGCACCCGGTCATTTTGCTAACAACGCAACACAACTCCGTTCTCCGGTTCGGTTCGGTGCAATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGCCGGAATGGGCCGAGCCCGAAGCCCAAACCGGGCTCGAAGAGCCTGTGTGGCAATTGGGAATGGGTGGTGGTGCTGGGGAGGAATCGTATCCGCAACGCCCCGATGAGGTTGATTGCACTTACTATTTGAGGACCGGCTTCTGTGGCTTCGGTTCCCGCTGTCGGTTCAACCATCCTCGTGATCGTGCCGTGGTTGCCGGAGCTGAGAGGACTGCAGGGGAGCATCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTTCATGAGGACAAGGACATGCAAATTTGGTTCATCTTGCAAGTACCACCACCCCAGGCAGGCAGGAGCAGGGGGCGCTGCTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACAGGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCACCATCGCCATTTGCCCCAGTTTCACCTTTGCCTGTACCAGTACCTTCGCCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCGTCCCAGCAAATTGGTGTGCTGGTTGCGAGGCCTCCTATGCTGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCCCCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGCATCAGGTGCTGTTCTTCCTTCTGGTACTCCATCTAATGTTGGTTCAGCACAGCTTTATGGGATAACCCAGCTACCTTCACCAGCAGCTGCCTATCCTGGACCTTATCCACCTTCTGGTTCCCCAGTTGGTCCTCCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAACCAACCAGAATATCAGTATTATCTGAAAACAGGGGAGGTTAAATTTGGTCCATCATATAGGTATAACCCTCCACCGGACATGAGTGTGCCGGACATGAGTACGCCAAAAGCAAATGTGATTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGTAATGATATCTGCATTCCCCACTAGGGAGGAGGTGGGGGTGAGAGTGGTCAGGTGTGTTAATGGCCGTATGCGGACTAAAACTGAAGTCTGTGGACGAATCAAATTAGGGATAAACCAGCCATTGTCTCCTTACATTTTCTCCAGTAGCCAACATCAG 1410 0.5206 MHNGCLLIWAVTSGPTFYLCTTSAGFSATVNDPSPLPAPGHFANNATQLRSPVRFGAMEQYGRSSEGSRSDPSPEWAEPEAQTGLEEPVWQLGMGGGAGEESYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAVVAGAERTAGEHPERVGQPVCQYFMRTRTCKFGSSCKYHHPRQAGAGGAAATPVSLNYYGYPLRQGEKECSYYVKTGQCKFGATCKFHHPVPAGIQIPPSPFAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSPYGPVVLSPAMVPISGWGPYQASASGAVLPSGTPSNVGSAQLYGITQLPSPAAAYPGPYPPSGSPVGPPSSSQKEQAFPERSNQPEYQYYLKTGEVKFGPSYRYNPPPDMSVPDMSTPKANVILSPAGLPLRPVMISAFPTREEVGVRVVRCVNGRMRTKTEVCGRIKLGINQPLSPYIFSSSQHQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01907 470 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 58 418 - -
Gma13g01907 470 SUPERFAMILY CCCH zinc finger 152 178 IPR036855 GO:0046872
Gma13g01907 470 PANTHER PROTEIN PHOSPHATASE RELATED 58 418 - -
Gma13g01907 470 MobiDBLite consensus disorder prediction 337 367 - -
Gma13g01907 470 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Gma13g01907 470 MobiDBLite consensus disorder prediction 352 367 - -
Gma13g01907 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 178 IPR000571 GO:0046872
Gma13g01907 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 108 133 IPR000571 GO:0046872
Gma13g01907 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 226 IPR000571 GO:0046872
Gma13g01907 470 Gene3D - 104 182 - -
Gma13g01907 470 SUPERFAMILY CCCH zinc finger 108 134 IPR036855 GO:0046872
Gma13g01907 470 MobiDBLite consensus disorder prediction 60 87 - -
Gma13g01907 470 Gene3D - 185 233 - -
Gma13g01907 470 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Gma13g01907 470 ProSiteProfiles Zinc finger C3H1-type profile. 106 134 IPR000571 GO:0046872
Gma13g01907 470 MobiDBLite consensus disorder prediction 337 351 - -
Gma13g01907 470 SUPERFAMILY CCCH zinc finger 202 227 IPR036855 GO:0046872
Gma13g01907 470 SMART c3hfinal6 106 133 IPR000571 GO:0046872
Gma13g01907 470 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Gma13g01907 470 SMART c3hfinal6 200 227 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01907 Gma-Chr13 34382559 34391933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01907 58 420 C2H2 Transcription Factor Family AT5G18550 55.405 5.52e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma13g01907 zf-CCCH 3.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01907 - - gmx:100782445 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00902 15 7526642 7534757 Gma13g01907 13 34382559 34391933 GST
Gma17g00221 17 1805391 1809748 Gma13g01907 13 34382559 34391933 PCT
Gma13g01907 13 34382559 34391933 Gma17g00221 17 1805391 1809748 PCT