Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01895 ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACCGGGAAAAAACAGTTTCATTGTGATGATTGTGGGATTTGTAGACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGA 804 0.4204 MEGSVLERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELVRQDVQHVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDTGKKQFHCDDCGICRLGGRENYSHCSKCGCCYSNTLRDNHLCVENSMRHHCPICYEYLFDSLKDIAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLSQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01895 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Gma13g01895 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Gma13g01895 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Gma13g01895 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gma13g01895 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Gma13g01895 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Gma13g01895 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 266 - -
Gma13g01895 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Gma13g01895 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 266 - -
Gma13g01895 267 Gene3D - 226 263 - -
Gma13g01895 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gma13g01895 267 SMART ring_2 153 195 IPR001841 -
Gma13g01895 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Gma13g01895 267 SUPERFAMILY RING/U-box 152 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01895 Gma-Chr13 34279033 34282580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01895 10 263 C2H2 Transcription Factor Family AT3G18290 39.544 4.38e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01895 K10144 - gmx:100781566 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00917 15 7635482 7639263 Gma13g01895 13 34279033 34282580 GST
Gma17g00211 17 1727719 1731155 Gma13g01895 13 34279033 34282580 PCT
Gma13g01895 13 34279033 34282580 Gma17g00211 17 1727719 1731155 PCT