Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01888 ATGGGGTGTGCGTTTGGGAGAGAGGCTTCGAGGGAGGAGAGGAGAGAGGAAGTGAGAGAGGCAAAAGCTGAGGAGGGTAGAGGAGAGGTTGTTGAGAATGAGAACATTGAGAAGGAGGGTGGAAGAGAGGAGAGGAGGGCAAGGACAAGGGGAGAGAGAAGGCGATCTTCGAAGCCGAATCCGAGGTTGAGCAATCCTCCTAACCATGTTCACGGTGAGCAGGTTGCTGCAGGGTGGCCCTCTTGGCTCTCTAAGGTTGCTGGTGAAGCTATCAATGGATTGACCCCTCGGAGGGCCGACACTTTTGAGAAGATTGATAAGatcgggcaaggtacatacagcaatgtttacaaagctagggatactttaacggggaaaattgttgctctaaagaaggtccgttttgacaatttagagcctgagagtgttaagttcatggccagagagattttgattctccgtcgtttggatcatcccaatgtcatcaaactggaaggcttagtgacatctagaatgtcatgcagtttatatcttgtgtttgaatacatggtgcatgatctggctggacttgccacaaacccagcaatcaagttcacagagtctcaggtaaaatgttacatgcatcagctattttctggactggagcattgtcacaaccgtcatgtgctgcatcgtgatataaagggctcaaaccttcttattgacaatgacggaattctcaagattggggattttggattagcttccttctttgatcctaatcacaagcaccctatgaccagtagagtggttacattatggtatcgacctccagagcttcttcttggggccactgaatatagtgtaggagtggacctctggagtgctggctgcattcttgctgaattattggctggaaagcctattatgcctggtcgaacagaggtagagcagctacacaagatattcaaactatgtggttctccttctgacgaatattggaaaaagtcaaagttgccacatgctaccatttttaagccccaacactcatacaagcgatgcattgcagagacatttaaagattttcctccatcttctctgccacttattgatacccttctagcaattgatccagatgaacgtttgactgccactgctgcATTGCATAGTGAAttctttacaacaaaaccatatgcttgtgagccctctagccttccaaaatatcctcccagcaaggagatggatgcaaaGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAGTTCCAGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGGCTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCCCCTGATGTTCCATTTAGTTCTACAAACTTATCACAACCTAAAGCAAATATCCAAACCTGGTCTGGCCCGTTGGTAGATCCTTCTGGTGTGGGTGTGCCGAGGAGAAAGAAGAAACATGGCAAGTGA 1623 0.2249 MGCAFGREASREERREEVREAKAEEGRGEVVENENIEKEGGREERRARTRGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKIDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIGDFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIDTLLAIDPDERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRERVGRGVPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNLSQPKANIQTWSGPLVDPSGVGVPRRKKKHGK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01888 540 MobiDBLite consensus disorder prediction 503 522 - -
Gma13g01888 540 ProSiteProfiles Protein kinase domain profile. 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01888 540 MobiDBLite consensus disorder prediction 467 540 - -
Gma13g01888 540 MobiDBLite consensus disorder prediction 7 59 - -
Gma13g01888 540 PANTHER CYCLIN-DEPENDENT KINASE 1 540 - -
Gma13g01888 540 MobiDBLite consensus disorder prediction 1 73 - -
Gma13g01888 540 CDD STKc_CDK9_like 102 386 - -
Gma13g01888 540 Pfam Protein kinase domain 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01888 540 Gene3D Transferase(Phosphotransferase) domain 1 185 425 - -
Gma13g01888 540 PANTHER CELL DIVISION PROTEIN KINASE 1 540 - -
Gma13g01888 540 SMART serkin_6 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01888 540 SUPERFAMILY Protein kinase-like (PK-like) 97 391 IPR011009 -
Gma13g01888 540 MobiDBLite consensus disorder prediction 421 441 - -
Gma13g01888 540 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Gma13g01888 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Gma13g01888 540 Gene3D Phosphorylase Kinase; domain 1 90 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01888 Gma-Chr13 34242191 34247028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01888 97 424 Core Cell Cycle Gene Families AT5G10270 50.291 2.07e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma13g01888 Pkinase 4.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01888 K08819 - gmx:100779413 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00925 15 7687500 7691792 Gma13g01888 13 34242191 34247028 GST
Gma17g00205 17 1688063 1692170 Gma13g01888 13 34242191 34247028 PCT
Gma13g01888 13 34242191 34247028 Gma17g00205 17 1688063 1692170 PCT