Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01886 ATGGGCCTAATCAGAAGCATGAGATCGCGGTCACAGCGTGTGGTGCAGGAGCAAGAAGCTGCTGAGTGTGTCGGTGTCGTCGTCGGCGACAGCATGCGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCCTCCGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGCGTCGTCTCCTGCGCCGGCGTCTGCCGCAGCTGGAGACATATCACCAAAGACATTGTCAAAACGCCCGAACTCTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTACGGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATACTATTTGTTTCTCAGTTTAACCAGTACGCTAGCTGAAGATGGGAAGTTCCTTCTTGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGACGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAACTTTCTTGGAACAAAGTTCACAATCTATGATAGCCAGCTGCCTCATACAGGAGCAAAGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAGCAAGTTTCACCCAAGGTTCCTACAGGCAACTATCCAGTGGCCCATATTTCATATGAATTGAATGTGCTAGGCTCAAGGGGTCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCACTGCAATTGAACCTGGAGGTGTAGCACCTACACAGACTGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCCCCTTTTTTCGATCAAAATCAAATCGTGCGGAAAATTCCATGTCTGGACCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTGAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAACGGACCTGCTGGACCAGAACACGATAAGATCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGTTTTGATACCAAGATTGCTTGTGAATGA 1170 0.4821 MGLIRSMRSRSQRVVQEQEAAECVGVVVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVSCAGVCRSWRHITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQLPHTGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEPGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRAENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01886 389 Pfam F-box domain 37 84 IPR001810 GO:0005515
Gma13g01886 389 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
Gma13g01886 389 Pfam Tub family 98 384 IPR000007 -
Gma13g01886 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Gma13g01886 389 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 389 - -
Gma13g01886 389 Gene3D - 30 91 - -
Gma13g01886 389 PANTHER TUBBY-RELATED 4 389 - -
Gma13g01886 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Gma13g01886 389 Gene3D Tubby Protein; Chain A 94 389 IPR025659 -
Gma13g01886 389 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Gma13g01886 389 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Gma13g01886 389 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Gma13g01886 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Gma13g01886 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Gma13g01886 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Gma13g01886 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Gma13g01886 389 SUPERFAMILY Tubby C-terminal domain-like 86 389 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01886 Gma-Chr13 34222453 34227577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01886 8 389 TUB Transcription Factor Family AT2G47900 72.727 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma13g01886 Tub 1.2e-112 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00927 15 7708576 7713579 Gma13g01886 13 34222453 34227577 GST
Gma17g00204 17 1684913 1687232 Gma13g01886 13 34222453 34227577 PCT
Gma13g01886 13 34222453 34227577 Gma17g00204 17 1684913 1687232 PCT