Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01880 ATGGAGTGCAATAAAGAAGAAGCCATAAGGGCCAAGGAACTTGCTGAAAAGAAAATGCAAAATAAAGATTTCAACGGGGCTCGAAAATTTGCTATTAAGGCTCAGCAGCTATATCCTGACTTGGAGAATATCACTCAAATGCTTATTGTTTGTGATGTGCATTGCTCTGCTGAGCAGAAATTGTTTAGCAATGAGATGGACTGGTATAAAATTCTTCAAATTGAGCTGACGGCTAATGATACAACAATTAAGAAGCAATACAGGAAGTTTGCCCTCCAACTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTTCTTTTGGATAGAGAAAAACGATCTAGACTTGACATGAATTTGCGCAGGGTTCCAATGAACAGAACTACTATGCCATCTCATCATCAGCAGAATGTTCAGATGAATTTTAATCCTGTGATGCAAACCAGTGTCAGGCCCAATTTTACAAACTTAAATCCTCAGCAGCCACAACCGTCTAGGCAGGCATCTCAGCAGGTGCCTAATGGTGGCTGCCCTACTTTTTGGACCGTGTGCTCATTTTGTTCTGTTAGATATGAGTATTATAGGGAGGTTTTAAACAGATCTCTTCGCTGTCAACATTGCAGTAGGCCCTTCATTGCATATGATGTGAATATGCAAGGCACAACACCAGCAACTAATTCAAGTCAGCAAGCTTTTGGTGTGCAGAACCATAGTCAGAATCATGGTGCTTTCAACGTTGGTGCTGGATCTCAAGGTAATTTGCATACTCGCAGGTCCAATACAGAATCACATAAGAAAAAAGGTCCCACTGCTGATGTCTCTGTAAAGCCAAATGGAAAGAGGAAGAGAAAGCAAGTAGCAGAGTCCAGTGAAAGTGCCGAATCTGTTGGCAGCACTGATTCTGAATCTGAAGAGGATATACTTTATGATAAGGATGGCTTTTCTACTCTTAGAGAAGAGAATCCACGTAGATCTACGCGGCAAAAGCATCAGGTTTCCTACAATGAGAATGTGAGTGATGATGATGAAGGGGGTGGATCTCCTTCTGGTGCTGGAGAAAATACTGGGGAGCCATCTAAAATGAATAATCAGAATGGTTTGGCTGCTGATCTGAAAGGCAATAAACAAGGGGAAAAGCGGAAGCAGAACTTTTATTCTGAAGAGAGCTTACAAAATATAGATGAAGAAATTAAGGAGGTGAGAGAAAAAGAGGCAGTTGGCAGCTCAAAGATAGACAAAGCTTCAGAGCATTCACCCTCGAAATCAACAAATCGACCAGATGATTTTGTTTACCCAGACGCAGAGTTCAGTGACTTTGACAAAGACAAGAAAGAGGGGTCTTTTGCTGTTGGGCAGATTTGGGCTATTTATGATACTATAGATGGTATGCCTAGATTCTATGCTGTAATCAGAAAAGTTTTCTCTCCTGGATTCAAGTTGCGGATAACATGGTTTGAACCAGATCCAGATGAGCAAGATCAGGTTCACTGGGTAGAAGAGGAATTGCCAATTGCTTGCGGGAAACATAAACTTGGCATCACTGATACCACTGAAGATCGTCTGATGTTCTCTCATCTGATTGTTTGTGAAAAGATTGGGCGCTGTACTTATAAAGTATATCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGCATATGGATGCAGAATCTCATCGTGAGTATGATTTTGAATTTGTTGAAATCTTGTCAGATTATGTTGAAGGTGTGGGAGTAGTTGTTTCGTACTTGGCTAAATTGAAAGGCTTTGTATGTCTCTTCTCTCGAATGGAGGGAGGTAATCGCACATTTCAAATTCCATCTAGCGAGTTATTCAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGCTGGTGTTCCTGTAGGATCTTATGAACTTGATCCGGTATCCTTGCCAATGAATCTTGAAGAGATTGCTGTTCCTGAACATTTGGAAGTAAAGGATGGTCATTGTCCATCTAGTGGGGTGGGCACAAGATCTTCAGATATGTGGAAATTCACGATGAACTCGGAGGGAGATGCTTCTACTGCAAAGGTTAAGTTGCAAAGAAACAATTCAGCAGAGGAGAACAAGGATCCTGTTAATCATATTGGTAATGATAGTGATCCTTCAGCTTCAGCTGCAGATGCTTTTGAAATTCCGGATCCTGAGTTCTGCAATTTTGATGCTAAGAGGTCCCTTGAAATGTTTCAGGTTGGTCAGATTTGGGCATTTTATGGTGATGAGGATGGACTGCCAAAATACTATGGTCATATTAAGAAGGTTAGGACTAGTCCAGATCTTGAGTTGCAAGTTACTTATCTTACTAACTGCTGGCTACCGGAGAAATGTGTTAAATGGGAAGATAAGGATATGCTTATTTCTATTGGAAGATTTAAAATCAAAGCAGGTGCTCATCCCTGCACATATGCAAACACCTATTATGTTTCGCATCAGGTGCAGGTTATTAACGATGGTAAGAAGAAGGAATATGAAATTTTTCCAAGGAAAGGCGAAATCTGGGCATTGTATAGGAATTGGACGACTAAAATAAAACGTTCTGACTTGTTAAACCTGGAATATGACATAGTTGAAGTTGTTGGAGAACAAGATTTGTGGATGGATGTTTTACCTTTGGAGTTGGTAAGCGGTTATAATTCAGTTTTCAAGCGCAAGTCCAATGCAGGATCAGCTAGGGCCACGAAAATATACTGGAAAGATTTGCTCAGTAATAGCTCCTGCATGATCACAGCTGATATGACATCACCTGAGAATCCCCAAGATATTGTTCCAGCTGCCATGGAGGTGTTGCTGGCTGTCATTTGCATTTTTTGTTTTGTTTCTCTTCCATTAGAATCCGAGTTGACTTAA 2934 0.4073 MECNKEEAIRAKELAEKKMQNKDFNGARKFAIKAQQLYPDLENITQMLIVCDVHCSAEQKLFSNEMDWYKILQIELTANDTTIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSRLDMNLRRVPMNRTTMPSHHQQNVQMNFNPVMQTSVRPNFTNLNPQQPQPSRQASQQVPNGGCPTFWTVCSFCSVRYEYYREVLNRSLRCQHCSRPFIAYDVNMQGTTPATNSSQQAFGVQNHSQNHGAFNVGAGSQGNLHTRRSNTESHKKKGPTADVSVKPNGKRKRKQVAESSESAESVGSTDSESEEDILYDKDGFSTLREENPRRSTRQKHQVSYNENVSDDDEGGGSPSGAGENTGEPSKMNNQNGLAADLKGNKQGEKRKQNFYSEESLQNIDEEIKEVREKEAVGSSKIDKASEHSPSKSTNRPDDFVYPDAEFSDFDKDKKEGSFAVGQIWAIYDTIDGMPRFYAVIRKVFSPGFKLRITWFEPDPDEQDQVHWVEEELPIACGKHKLGITDTTEDRLMFSHLIVCEKIGRCTYKVYPRKGETWALFKNWDIKWHMDAESHREYDFEFVEILSDYVEGVGVVVSYLAKLKGFVCLFSRMEGGNRTFQIPSSELFRFSHRVPSFKMTGQERAGVPVGSYELDPVSLPMNLEEIAVPEHLEVKDGHCPSSGVGTRSSDMWKFTMNSEGDASTAKVKLQRNNSAEENKDPVNHIGNDSDPSASAADAFEIPDPEFCNFDAKRSLEMFQVGQIWAFYGDEDGLPKYYGHIKKVRTSPDLELQVTYLTNCWLPEKCVKWEDKDMLISIGRFKIKAGAHPCTYANTYYVSHQVQVINDGKKKEYEIFPRKGEIWALYRNWTTKIKRSDLLNLEYDIVEVVGEQDLWMDVLPLELVSGYNSVFKRKSNAGSARATKIYWKDLLSNSSCMITADMTSPENPQDIVPAAMEVLLAVICIFCFVSLPLESELT 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01880 977 MobiDBLite consensus disorder prediction 412 434 - -
Gma13g01880 977 Pfam Domain of unknown function (DUF3444) 738 939 IPR024593 -
Gma13g01880 977 Pfam Domain of unknown function (DUF3444) 439 643 IPR024593 -
Gma13g01880 977 PRINTS DnaJ domain signature 69 87 IPR001623 -
Gma13g01880 977 PRINTS DnaJ domain signature 87 102 IPR001623 -
Gma13g01880 977 PRINTS DnaJ domain signature 103 123 IPR001623 -
Gma13g01880 977 MobiDBLite consensus disorder prediction 161 183 - -
Gma13g01880 977 CDD DnaJ 67 120 IPR001623 -
Gma13g01880 977 MobiDBLite consensus disorder prediction 319 348 - -
Gma13g01880 977 PANTHER - 1 939 - -
Gma13g01880 977 MobiDBLite consensus disorder prediction 274 300 - -
Gma13g01880 977 MobiDBLite consensus disorder prediction 250 268 - -
Gma13g01880 977 SUPERFAMILY Chaperone J-domain 63 147 IPR036869 -
Gma13g01880 977 MobiDBLite consensus disorder prediction 250 398 - -
Gma13g01880 977 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Gma13g01880 977 MobiDBLite consensus disorder prediction 703 735 - -
Gma13g01880 977 SMART dnaj_3 66 123 IPR001623 -
Gma13g01880 977 MobiDBLite consensus disorder prediction 412 441 - -
Gma13g01880 977 Pfam DnaJ domain 67 128 IPR001623 -
Gma13g01880 977 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 939 - -
Gma13g01880 977 MobiDBLite consensus disorder prediction 384 398 - -
Gma13g01880 977 MobiDBLite consensus disorder prediction 363 381 - -
Gma13g01880 977 Gene3D DnaJ domain 64 172 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01880 Gma-Chr13 34148743 34151955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01880 4 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.681 2.67e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01880 - - gmx:100779228 1884.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00932 15 7763904 7769199 Gma13g01880 13 34148743 34151955 GST
Gma17g00198 17 1627794 1631557 Gma13g01880 13 34148743 34151955 PCT
Gma13g01880 13 34148743 34151955 Gma17g00198 17 1627794 1631557 PCT