Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01878 ATGCAAGCGCCACAAGCATCATCACTCACTGATGAAGAAGCTCCTGAAATTTCCCATCAGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGACGGTGGACCAGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTACAGGGTTTGGCAGCACTAGTGGTGTAAGGGTTCTGGATCATTCTCAAAGTTTCGGTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGTTCCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACAGTCCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACGCCCATTTCTGCAAGGGCATATAATGAACAGACTAAGCCTCATAAAGATGTTGATTGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCCGGGCGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGCGAACAGGAGCAACAAGAGTCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTATGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAGTTAAATGGTTTAGCACAAAAGGAGATAAGAAATGTGATGTATGTAGGCTAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACTAGCTCTGTTCAAAGAGAAAACAGACAGCTGCAAGGTCAGCAGAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCGATTATTATAGCATCACCATTTGCCTTTACGTTGGGCCTCCTAGCTTCCATTTTTGCAGTTATCCTACCAATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCCCTTGTGGCTTTAACCGTGCATCTATTTTATACTATGttgcatttgacggccatatatgccatactactttcatcagttttgggttttggagttgctatgggcatcaactatgcgaaaagcaacggggataccattcttcattctaccatcgctagtgaatactttggtttggcgcttcaaataatagagttgtacccaaaccttgtgaattctgtaaaccaggacgggttatcacctctgcagattcttgcagcgaagcctaattgtttcaaaagcagcacgcggatggagttacttcagagtattatttacaagtgttcgattgttgatgagattgaggaaacatatgatatacgttgtaatgaagcagacacaactcatcactaccctatgaactatgaaacatgcgccaccttcttatcattgttgaagagtacttcaattggaaaagatgacaacgctgcaagcaatgatgaagagaataatgtctcccgaaaatctgaggaagaacaagcaaagaaattggaaaagaaacgctacctgttccctcccaattggggagcaacgatccgattcctaacccatatgatgaagatcttgctaatcatttgcggttttggagcatcttggatagggaaaatccaacgaaagaaggtgaaacacattctagccaagcaagtgatgaatgaactaattcagcgaacttgttcttcttccctgtacaagcatgaccacactggaacaagtaacataaatagtagtactagtagtaataatcaaagtaaggagaaaggaggttttcagaaaataagaagaacagattcacctattttgattgcagcaaagatgggagtggcagagatggttgagaagattcttgagacagacccagtggcaatccatgacgtggacgctgataacaagaatgttgttcttctggccatagagaacaggcaacctcatgtttacagcttgttgaatgagaggagcatgattaaagagactgcatttcgtcaagtggataaccaagggaacagtgctttgcatcttgctgccacctataggagttataagccatggcgtgtccctggtgctgcattgcaaatgcagtgggaatacaagtggtataagctagttaagaactccatgccaccaaatttctatgaacgttacaacgagaacgggcaaacagcgaagcaggacatttcttcatcgttgaagacgagctga 2334 0.2091 MQAPQASSLTDEEAPEISHQAVPQRNKEVSDGGPGGRRPDISLQVPPRPTGFGSTSGVRVLDHSQSFGKGISSSRGFLRALSFKRKGNVADGERSSLLNSDPKTAADSPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARAYNEQTKPHKDVDCSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQESNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLVKWFSTKGDKKCDVCRLEVQNLPVTLLRVTSSVQRENRQLQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIASPFAFTLGLLASIFAVILPIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGVAMGINYAKSNGDTILHSTIASEYFGLALQIIELYPNLVNSVNQDGLSPLQILAAKPNCFKSSTRMELLQSIIYKCSIVDEIEETYDIRCNEADTTHHYPMNYETCATFLSLLKSTSIGKDDNAASNDEENNVSRKSEEEQAKKLEKKRYLFPPNWGATIRFLTHMMKILLIICGFGASWIGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTGTSNINSSTSSNNQSKEKGGFQKIRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIENRQPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRVPGAALQMQWEYKWYKLVKNSMPPNFYERYNENGQTAKQDISSSLKTS 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01878 777 MobiDBLite consensus disorder prediction 611 632 - -
Gma13g01878 777 MobiDBLite consensus disorder prediction 519 538 - -
Gma13g01878 777 ProSiteProfiles Zinc finger RING-type profile. 216 263 IPR001841 -
Gma13g01878 777 ProSiteProfiles Zinc finger RING-CH-type profile. 208 269 IPR011016 GO:0008270
Gma13g01878 777 Gene3D - 390 726 IPR036770 -
Gma13g01878 777 SUPERFAMILY Ankyrin repeat 639 725 IPR036770 -
Gma13g01878 777 CDD RING_CH-C4HC3_MARCH 216 263 - -
Gma13g01878 777 PANTHER OS02G0165000 PROTEIN 1 405 - -
Gma13g01878 777 MobiDBLite consensus disorder prediction 89 109 - -
Gma13g01878 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 270 IPR013083 -
Gma13g01878 777 MobiDBLite consensus disorder prediction 1 58 - -
Gma13g01878 777 MobiDBLite consensus disorder prediction 521 538 - -
Gma13g01878 777 PANTHER ZINC FINGER PROTEIN 1 405 - -
Gma13g01878 777 MobiDBLite consensus disorder prediction 611 635 - -
Gma13g01878 777 SMART ringv_2 215 263 IPR011016 GO:0008270
Gma13g01878 777 Pfam RING-variant domain 216 262 IPR011016 GO:0008270
Gma13g01878 777 SUPERFAMILY RING/U-box 212 266 - -
Gma13g01878 777 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01878 Gma-Chr13 34107244 34118426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01878 154 319 C3H Transcription Factor Family AT2G37950 28.729 3.61e-10 58.9