Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01876 ATGGAACCCCTGTCTCTCCCTCCTCTCCCAGTCATGGACGACGCCGAAGACCCTTCCTCCATTTGGGACTTCTCTTACCTCCTCGACTTCGACCTCGACGACCAAGATATTATTATTAATAACAACAACTCTCTCCCTCTTCCCTTAAACGACCACCCCGCTCCAAGCGAGATCCCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCGATACTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCATCCGCTCGCTGCCAGGTCCCTGCCTGCGAGGTCGATATCTCAGAGCTGAAAGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGGCGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAGGGTAAACGGAGCTGTAGAAGGAAGTTAGAGCGGCATAACACCAGAAGGAGAAGAAAGCCTACGGCGGATTCTGGAGGGGCTACTCATAGTGAACTACTTCAACCTGTTGCCGAAAACGAGGAAAACAATTATGATGTGGAAGCTGGAAAAGATTGTTCGAATTTGAGTACCGATATCAACGACGTTGGAGTGTCTCTGGATCTTGAAGATGAACCGGCTCCCATTCCGAGCTCGGCTCCTGAAGCCCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCCAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACTGCACTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAATGTCAAGGTAAACATGCATGCACCGAAGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCTTCTCCACATAGCTGGACTGAAGACAACATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAAAAATTTGTACTGAAATGAAGACACTGCAACAAAAATTAGATGTATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATCTGTAGCTCATGCGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGACTTTCTGATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATGTTGTAATTAATAGGACAAGTGATGTTGACATAATGCAACTCCTGAATCACATACATAATGCTAGAAATGCCGTATATCAGAAACATCCGAAAAGTGAAAGTATAATTGTGCACTCTGAAATGAAAGGCTTTATACTTGCTCAGGGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTCCAACTTCTAATGAGAAAATGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGTATGGAAGAGTTGCCTGAAAGATACGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTTTCGGCCAGCTATTTTTGTGTTGGTTTCGGTTGCTGTATGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2331 0.4453 MEPLSLPPLPVMDDAEDPSSIWDFSYLLDFDLDDQDIIINNNNSLPLPLNDHPAPSEIPQNDRVRKRDPRLTCSNFLAGRVPCACPELDAILEDEGLPGKKRARTARASASARCQVPACEVDISELKGYHRRHRVCLRCANAATVMLNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPTADSGGATHSELLQPVAENEENNYDVEAGKDCSNLSTDINDVGVSLDLEDEPAPIPSSAPEAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPLEYVHDIVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTNVKVNMHAPKLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKKICTEMKTLQQKLDVSLLSKQFRSASGGSICSSCETFALSHTSSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTESMKSNVVINRTSDVDIMQLLNHIHNARNAVYQKHPKSESIIVHSEMKGFILAQGCSQDNKLSVAINSQGIQSRADEKWGVLKVKSPTSNEKMERIPLLKRDIIMSMEELPERYGRRCLGRGFLTFRPAIFVLVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01876 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 774 IPR044817 GO:0003677
Gma13g01876 776 MobiDBLite consensus disorder prediction 178 208 - -
Gma13g01876 776 Pfam SBP domain 114 188 IPR004333 GO:0003677
Gma13g01876 776 Gene3D - 109 175 IPR036893 GO:0003677|GO:0005634
Gma13g01876 776 ProSiteProfiles Zinc finger SBP-type profile. 111 188 IPR004333 GO:0003677
Gma13g01876 776 SUPERFAMILY SBT domain 112 190 IPR036893 GO:0003677|GO:0005634
Gma13g01876 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01876 Gma-Chr13 34069677 34077241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01876 7 770 SBP-box Gene Family AT5G18830 47.595 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma13g01876 SBP 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01876 - - gmx:100776034 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00937 15 7810614 7818580 Gma13g01876 13 34069677 34077241 GST