Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01868 ATGTCCAATATATTATTGTGTCATGCTCTTTGGTTTTTGCTGACAAAAGATTATGTTGGAAGCAATGGCGTCCACAAGTTAGAAAGAAAACAAATAGCTGAAAGAGAAAGAAAACAAATAGCTGGAAGGGATAGATCGGTTTTTAGAGGCAGGCGTCCACGACCTGGGTTTTCTGATTCATTTTCAAGCACTGACTTGGAAGCTTTAGAGATTGAAGAGGGCTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGGCCAGCACTTCTGATTCGGAGAGTCAGGGATCTTTTGCTGGGGCACCTAATACCAATAACCAATGGCGGGGTTTCTTTAAACTACTCAAGAAAGGATCACAAATGCCTTTCCAACCTTTTCACCCACTTAAAAATGTTCCAAAACTGACAAGAAGAAAAAGCAAGAGGATCAGGGAGGACCTCATTCCTTCTCTGAATTCTCCAGCTCTTCATGCATCTTTTGACGCTGAGTTTGGCTGCTTCAAATCTTCCTGGAAAAACTTCACTCTCGCCGAGATCCAAGCTGCAACCAATGACTTTAGCCATGAAAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTGGGCAAATTGGAGGATGGAAACTTTGTTGCCATTAAAAGGTTGACAAGAGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCACGTGGACCACCCAAACATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCCTGTCATCCATACTTTATGGACCCAGAgagaaactgaattggaacctcagatataagattgctttggggactgctgagggccttcgctatctgcatgaggagtgtcaaagaaggatcattcacaaagacatcaaagcttcTAATATTCTTCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTGCCCGACCAATGGACTCATCACACCGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTTATGCATGGTATAGTAGATGAAAAGACTGATGTCTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTAACTGCAAATAACATCAAAGAGCTTGTGGATCCAGTTTTGGCTGATGCTTATGATGAAGAGCAGATGAAACTTGTAACCTTAACAGCTTCTCTGTGTGTAGACCAGTCCTCAATTCAACGACCGGATATGAGCCAGGTATTTGATATACTAAGAGGGGAAGAAGAGAGCTTAAGAATCATGGAAGAACGATCGAAGTCAAAACTTCAGAGGACATACTCTGAAGAACTCTTTGATGCAGAAGAGTACAACTCAACAAAGTTTTTGAGTGAGAGGGATCGACACATGGAGACTATTCTAGGCTGCAGTAGCTCTGTTACAGACGATGAAGAGAAAATCTAG 1545 0.3961 MSNILLCHALWFLLTKDYVGSNGVHKLERKQIAERERKQIAGRDRSVFRGRRPRPGFSDSFSSTDLEALEIEEGSPRSQGSETPSSRASTSDSESQGSFAGAPNTNNQWRGFFKLLKKGSQMPFQPFHPLKNVPKLTRRKSKRIREDLIPSLNSPALHASFDAEFGCFKSSWKNFTLAEIQAATNDFSHENLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWNLRYKIALGTAEGLRYLHEECQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLTANNIKELVDPVLADAYDEEQMKLVTLTASLCVDQSSIQRPDMSQVFDILRGEEESLRIMEERSKSKLQRTYSEELFDAEEYNSTKFLSERDRHMETILGCSSSVTDDEEKI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01868 514 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
Gma13g01868 514 SMART serkin_6 187 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01868 514 MobiDBLite consensus disorder prediction 37 52 - -
Gma13g01868 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Gma13g01868 514 MobiDBLite consensus disorder prediction 76 106 - -
Gma13g01868 514 Pfam Protein tyrosine and serine/threonine kinase 190 449 IPR001245 GO:0004672|GO:0006468
Gma13g01868 514 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 51 490 - -
Gma13g01868 514 SUPERFAMILY Protein kinase-like (PK-like) 172 474 IPR011009 -
Gma13g01868 514 MobiDBLite consensus disorder prediction 37 106 - -
Gma13g01868 514 ProSiteProfiles Protein kinase domain profile. 187 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01868 514 Gene3D Phosphorylase Kinase; domain 1 153 261 - -
Gma13g01868 514 PANTHER OS08G0249100 PROTEIN 51 490 - -
Gma13g01868 514 Gene3D Transferase(Phosphotransferase) domain 1 264 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01868 Gma-Chr13 33996470 33999884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01868 159 456 Receptor kinase-like Gene Family AT1G53420 39.869 1.54e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma13g01868 PK_Tyr_Ser-Thr 5.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01868 - - gmx:102670300 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00942 15 7859179 7862732 Gma13g01868 13 33996470 33999884 GST