Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01860 ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCCTCAGTGAGTGGCTCTAGAGACTTCAGAGAACTTGGACCTTACTGTGCCCAAAGGAAGCACATTCTCACTCAGAGTTTATTGCAATTTGTTCCTGTCCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAAGAAAACCAAGATAGTTTTAGCATTAGGACACAGTTTCAAGGCAACCCCAGTGTCCATTTCTTTGGTGTCTACGATGGACATGGCGAATTTGGTGGCCAGTGTTCAAATTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCTAGTGACATTGCATTGTTGGAGGACCCTGTTAAGGCCTACACCTCTGCATTCCTGACCACGAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGCACCACGGCAATTACGGTGCTGGTTATTGGGAACACCCTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTGGCTGTTAAGGACGGGAACCGGGTTGTTGCGGAGGACTTGTCTTCTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGATGGTTCCTGGAGCTGCTTTTACAAGGAGTGTTGGGGATAAGTTGGCTGAGACTATTGGTGTTATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCTCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTAGAACATGAGGGTCGAACAGATGATATAACAATTATCATAGTTCAGATCAAAGGCCTGTCTAATTCAGTTACATCTGGACATGGAGCAAGTGAGATCAATGTCAGTACTGTAACAAGGACAAAGAGCAAGAGGGTAAAGGGAGCATCTGAAATATCTGCCACTACTGGGTTAGATGTGTATCGTTCAGTCAGGAATGGTTTCTCTGATTTACAGTCCTGTCCTCAGCATGTGGTCTCAACTAGAAGCCCAGCCATAGTGGTCCCCTCTCCAGCATGTCAAACTCCAGTTGAATTGTAA 1284 0.4509 MGCVHGKCCTRYPSPSVSGSRDFRELGPYCAQRKHILTQSLLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFSIRTQFQGNPSVHFFGVYDGHGEFGGQCSNFVKDRLVENLSSDIALLEDPVKAYTSAFLTTNDDLHKNEIDDSLSGTTAITVLVIGNTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDKLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSVTSGHGASEINVSTVTRTKSKRVKGASEISATTGLDVYRSVRNGFSDLQSCPQHVVSTRSPAIVVPSPACQTPVEL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01860 427 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 34 422 - -
Gma13g01860 427 SUPERFAMILY PP2C-like 42 347 IPR036457 -
Gma13g01860 427 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Gma13g01860 427 Pfam Protein phosphatase 2C 79 320 IPR001932 -
Gma13g01860 427 CDD PP2Cc 71 345 IPR001932 -
Gma13g01860 427 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Gma13g01860 427 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 34 422 - -
Gma13g01860 427 Gene3D - 48 347 IPR036457 -
Gma13g01860 427 SMART PP2C_4 51 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01860 Gma-Chr13 33927859 33931592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01860 1 350 PP2C-type Phosphatase Gene Family AT3G06270 71.714 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01860 - - gmx:100817563 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00950 15 7936077 7940064 Gma13g01860 13 33927859 33931592 GST
Gma17g00183 17 1535195 1538226 Gma13g01860 13 33927859 33931592 PCT
Gma13g01860 13 33927859 33931592 Gma17g00183 17 1535195 1538226 PCT