Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01854 ATGATTGTGAAGGATCATTTTGTTGGTACTGAACTGGCAATGAGTAATACTTGTGTGGAGGAGGGAATAGATTTCTCTTGTGACCCATACATAGGGTTAGAATTTGATACAGCTGATGAAGCACTTAAGTATTACACTTCATATGCCAATCGAACAGGGTTTAAAGTTCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCGAAGGAGGGACATCAACTTAGTTCAAGAACTGACTGTCCAGCATTCATAAGGGTACAACTAAATGGTTCTGGAAAGTGGGTGGTTGATCATTTTCATAAGGACCATAATCACCATCTTGAAATCAGTGGTGAAAATTGCACTCCAACATTGCAACCGAAGGGTGCTGGTGCTACAGTTATCAACTCTCTTACTGAGTTTCCTCGCAGGACGAGGAAGAAATTGCTTGAAGAAGCCAATGATGAGTCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAACTTGAAGGACAGTCCAGGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAACGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTCGATCACATCCCGCAGATTTGTTTGCTCTAAAGAGGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCATCGGGAAAGTGGATAGTGGACCGCCTCCGAAAAGATCATAACCATGATCTGGACTCTGAAAAGGTGGGCAGGGCAAAAAGTCTTCCTGCTTCTAATATTTTGGCTGAAGAGACACCTCTCATGGAGTTCATTCCTCGGTATGAAAGGGGTCTCGAGCGACGCCGTGAAGAAGAAAGAAAAGAGGATTTTAACACTTCTAATTTTCAACCCATTTTGCAAACTAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTACACTCTTACTGTTTTCAAAATATTTCAGAAAGAGCTTTTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGATATTGCAATTAAGAGAAGTCCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCTGACATGGAATCATGGAGTAGCTCTCAGGAACTAAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCTTTGAAAAGTATAAACTTGCCTTTGAAATTTTGCGCGAGGGTGGGAGAAAGCTTTGTTGGCACAGAACTCTCTTGCAAAACCCTCGAGCTTCTGAATCTTCAATGAACGACGTTAATAGAATCCTCGTCGGCGCTTCCGAATCCCTCAACGAACAATGTGAATCTTCTCCTTCTCTGCAGTGGCATGAATCCTCGTGCATCTTCCAATTCGAGTGTCGTGCTGAGGCCTTGTGGCCGCTATTGTTCTTAACGTTCATGTTCATAATTGTTCTGATTACGATAGACCATGCGTCAACTGGGATTTTTATATTTTTGGGTTCCATATTGGGTTTGTTCCTATGGTATTGGTTAGGATCGCTTGTATTAGATCGTGACAACTGGGATAACTCACACGACGTGGATGATGAGAGAACGAGAGAGTTTCAAAACATTGAGTCGTCTAATGCTAGTGATCCGCAGAATTCTCTCCCTCTCACAAGGACTCGCATTGTGATCGCGAGTGTAAGGGCTCGAAGGGAACCTTGGCAAGATGTACAACCATTTTCTTTTGCCCCAAGAGCACATGCTGCTAGGCTATCCATGAGAGCCTTGCCCCCCGCTATATGTTTTCAGGGTGATGACGAATCCCAACGTGATTGTCCTATTTGCATGGAAGATTTCAAGAATGGAGAGTTAATTCAACCTTTTGGAGTTTGTGTCCATGAGTTTCATTTGTCATGCGTTAACTCTTGGTTACTCGGTGGTGGAAAGACTACTTGTCCGGTTTGTCGCAAGGATTTATCAATTAGTGTAGACTAG 2100 0.4271 MIVKDHFVGTELAMSNTCVEEGIDFSCDPYIGLEFDTADEALKYYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTDCPAFIRVQLNGSGKWVVDHFHKDHNHHLEISGENCTPTLQPKGAGATVINSLTEFPRRTRKKLLEEANDESSCPFGIIDFKRLRKEELEGQSRTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLDSEKVGRAKSLPASNILAEETPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLTVFKIFQKELLQCFSYLGFKIFEEGGLSRYMILQLREVPSRYILHRWTRNAEDGVFPDMESWSSSQELKNLMLWSLRETASKYIDAGATSFEKYKLAFEILREGGRKLCWHRTLLQNPRASESSMNDVNRILVGASESLNEQCESSPSLQWHESSCIFQFECRAEALWPLLFLTFMFIIVLITIDHASTGIFIFLGSILGLFLWYWLGSLVLDRDNWDNSHDVDDERTREFQNIESSNASDPQNSLPLTRTRIVIASVRARREPWQDVQPFSFAPRAHAARLSMRALPPAICFQGDDESQRDCPICMEDFKNGELIQPFGVCVHEFHLSCVNSWLLGGGKTTCPVCRKDLSISVD 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01854 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 697 IPR013083 -
Gma13g01854 699 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Gma13g01854 699 Pfam FAR1 DNA-binding domain 199 273 IPR004330 -
Gma13g01854 699 Pfam Ring finger domain 646 691 IPR001841 -
Gma13g01854 699 ProSiteProfiles Zinc finger RING-type profile. 647 691 IPR001841 -
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 295 375 - -
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 26 119 - -
Gma13g01854 699 SUPERFAMILY RING/U-box 630 696 - -
Gma13g01854 699 SMART ring_2 647 690 IPR001841 -
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 295 375 IPR031052 GO:0006355
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 276 IPR031052 GO:0006355
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 374 453 IPR031052 GO:0006355
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 119 IPR031052 GO:0006355
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 374 453 - -
Gma13g01854 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 147 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01854 Gma-Chr13 33861560 33868640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01854 641 694 C3H Transcription Factor Family AT3G10910 38.889 8.30e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gma13g01854 FAR1 6.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01854 - - gmx:100816656 605.905