Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01832 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACCTCCAAAACCGACCACCACCTCCACCCCCTTCTTACTACTACCATACAGAATCCCACCCTGCACCACCACCGCAGCCGCAAGGTTACTTTCTCCCTTCAGCAACCCCTTACGCCCCTCCCCCTCCCATGCCGCCGCCGCCACCACCACAAACCCACTCAATTTCTTTCTATTACAGCTCCAACCCCAATTCCTACGGCACTCCCACTCTCGCCCCTCGCTTTCACTACCCGCAGCATTACTACCACCCCCAGCCCCAGCCCCAGCTCGCCGCGTGGCCCGTCCCTCGTCCTGCTGCCCCCACTCCTCCGCCCTACGTCGACCACCAGACCGCCAAGAAGATAAGGAACTACGTCAATGTCCACAAAGACACCCTGCGCCTCGAGGTCGACGACCATAACCCCGATCTTCATCTTCTCTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTATCTTATACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTATATCCCGAGGCATTTCAGCCGGTCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTAGTAATATGTGCTGAAACAAGTTTGAAAACTACCTCAGAAGATGAAACTCCTGGTGATTCCTTGCTAGACGCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCATTCCTAATAAAAGTAGTTAAGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGGGAGTTATATGGAATAGGAAACTCATCCGCAGCTGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTTTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAATGCTCATCGACTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGGTGAACAATGGCGATCATTGA 1116 0.4866 MGISWSGRRRNNYLQNRPPPPPPSYYYHTESHPAPPPQPQGYFLPSATPYAPPPPMPPPPPPQTHSISFYYSSNPNSYGTPTLAPRFHYPQHYYHPQPQPQLAAWPVPRPAAPTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDDHNPDLHLLSFVFDAVYDGSITILYFAKEEEKCRFVPLYPEAFQPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTTSEDETPGDSLLDASPHMQITQGVLEKSNGAGPFLIKVVKQILWIDGVRYELRELYGIGNSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANAHRLQSNKCPICRQSIEELIEIKVNNGDH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01832 371 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 315 355 IPR045195 -
Gma13g01832 371 ProSiteProfiles Zinc finger RING-type profile. 316 355 IPR001841 -
Gma13g01832 371 SMART ring_2 316 354 IPR001841 -
Gma13g01832 371 MobiDBLite consensus disorder prediction 1 64 - -
Gma13g01832 371 Pfam Zinc finger, C3HC4 type (RING finger) 314 360 - -
Gma13g01832 371 PANTHER MAHOGUNIN 1 370 IPR045194 GO:0061630
Gma13g01832 371 SUPERFAMILY RING/U-box 315 361 - -
Gma13g01832 371 MobiDBLite consensus disorder prediction 15 64 - -
Gma13g01832 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 370 - -
Gma13g01832 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 365 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01832 Gma-Chr13 33619283 33622785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01832 89 370 C3H Transcription Factor Family AT3G06140 59.259 2.44e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01832 - - gsj:114373285 699.893